BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308F09f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 144 7e-36 SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 143 2e-35 SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 5.2 SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 25 9.0 >SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosaccharomyces pombe|chr 2|||Manual Length = 144 Score = 144 bits (349), Expect = 7e-36 Identities = 65/122 (53%), Positives = 87/122 (71%) Frame = +1 Query: 7 KIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGV 186 K + AA LK++GK+ P+ +D+VKT KELAPYDPDW+YVR AAI RHIY+R VGV Sbjct: 13 KFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGV 72 Query: 187 KTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLD 366 + K++GG G+ PSH SGS+ RK +QSLE + ++EK +GGR ++ QG+RDLD Sbjct: 73 GRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLD 132 Query: 367 RI 372 RI Sbjct: 133 RI 134 >SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Schizosaccharomyces pombe|chr 2|||Manual Length = 143 Score = 143 bits (346), Expect = 2e-35 Identities = 64/122 (52%), Positives = 87/122 (71%) Frame = +1 Query: 7 KIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGV 186 + + AA LK++GK+ P+ +D+VKT KELAPYDPDW+YVR AAI RHIY+R VGV Sbjct: 13 QFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGV 72 Query: 187 KTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLD 366 + K++GG G+ PSH SGS+ RK +QSLE + ++EK +GGR ++ QG+RDLD Sbjct: 73 GRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLD 132 Query: 367 RI 372 RI Sbjct: 133 RI 134 >SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosaccharomyces pombe|chr 1|||Manual Length = 988 Score = 25.4 bits (53), Expect = 5.2 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = +2 Query: 86 QLASKSWLRMTLIGSMCVVL 145 +L SKSWL + +G +C+ L Sbjct: 359 KLLSKSWLSLEPVGQICISL 378 >SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 391 Score = 24.6 bits (51), Expect = 9.0 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%) Frame = -3 Query: 360 VSSTLCGENATT----VLNFLNKLQCLQRLQSLAC 268 VSS C E T L+ +N ++C+ LQS+ C Sbjct: 261 VSSKNCFEEPITPRFQALHRINMIECIPELQSVVC 295 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,927,002 Number of Sequences: 5004 Number of extensions: 35076 Number of successful extensions: 91 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 90 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 91 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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