BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308F09f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30) 99 1e-21 SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3 SB_9755| Best HMM Match : Sushi (HMM E-Value=0) 29 3.1 SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1 SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 >SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30) Length = 92 Score = 99 bits (238), Expect = 1e-21 Identities = 52/110 (47%), Positives = 67/110 (60%) Frame = +1 Query: 43 TGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKR 222 +G +K+P+ +DLVKT +FKELAPYDPDW+Y+R GRK Sbjct: 2 SGNLKIPDWVDLVKTGKFKELAPYDPDWYYIRA-----------------------GRKN 38 Query: 223 NGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 372 G PSHF S S+AR L+ LE +KLVEK GGR +T+QG+RD+DRI Sbjct: 39 RGSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGRNITSQGQRDMDRI 88 >SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 128 Score = 29.9 bits (64), Expect = 1.3 Identities = 19/62 (30%), Positives = 29/62 (46%) Frame = +1 Query: 121 DWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEAL 300 D +YVR A + I + G + +I R+R VTPS S G + L L+ + Sbjct: 57 DQWYVRDACVSPSENISTNYGSPKLPRIVETRQRGDVTPSPLVLSRGISRERLLTKLDRM 116 Query: 301 KL 306 +L Sbjct: 117 QL 118 >SB_9755| Best HMM Match : Sushi (HMM E-Value=0) Length = 1351 Score = 28.7 bits (61), Expect = 3.1 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = +3 Query: 240 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 332 TF ++ C +GF ++G +S+G+WS Sbjct: 21 TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 51 >SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 455 Score = 28.7 bits (61), Expect = 3.1 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = +3 Query: 240 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 332 TF ++ C +GF ++G +S+G+WS Sbjct: 286 TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 316 Score = 27.5 bits (58), Expect = 7.1 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = +3 Query: 240 TFLQVIRQYCTQGFAIVGG-IEAC*ESSGRWS 332 TF + C +GF ++G + +C +SSG+WS Sbjct: 112 TFPNKVTFSCDEGFILIGSPLRSC-QSSGKWS 142 >SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 386 Score = 27.5 bits (58), Expect = 7.1 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 1/107 (0%) Frame = +1 Query: 7 KIVKTVAAHLKKTGKVKVPEHMD-LVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVG 183 K KT ++VP ++ L T R E+ + W V+C IY+ S + Sbjct: 229 KYTKTFVIMSGSNRPMRVPHSLEPLTLTNRVAEVT-FCRSWNAVKCTKYCALIYLHSRLD 287 Query: 184 VKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQD 324 + V K+ GRK T + S + + S E L L +V + Sbjct: 288 TQPVNKVI-GRK---YTKTFVIMSGPNRPMRVPHSSEPLTLTNRVAE 330 >SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 346 Score = 27.1 bits (57), Expect = 9.4 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +3 Query: 6 QDC*NCRCSLKKNGQSQGT*AHGSCKDSSLQRAGSV 113 QDC + RC +KNG + T A G CK S + ++ Sbjct: 305 QDCSSSRCFWRKNG-IECTPACGQCKGSDCTNSPAI 339 >SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1048 Score = 27.1 bits (57), Expect = 9.4 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = +3 Query: 240 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWSHSHHT 347 T+ I C +G+A++G +++G WS S+ T Sbjct: 913 TYSSTINITCDEGYALIGPESRVCQANGTWSGSNVT 948 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,305,880 Number of Sequences: 59808 Number of extensions: 296873 Number of successful extensions: 638 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 583 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 638 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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