Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   147   4e-36
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   147   4e-36
Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  147 bits (357), Expect = 4e-36
 Identities = 72/125 (57%), Positives = 89/125 (71%), Gaps = 1/125 (0%)
 Frame = +1

Query: 1   QDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPV 180
           Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ RH+Y R P 
Sbjct: 12  QHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFR-PA 70

Query: 181 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRR 357
           G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+
Sbjct: 71  GIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRK 130

Query: 358 DLDRI 372
           DLDRI
Sbjct: 131 DLDRI 135


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  147 bits (357), Expect = 4e-36
 Identities = 72/125 (57%), Positives = 89/125 (71%), Gaps = 1/125 (0%)
 Frame = +1

Query: 1   QDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPV 180
           Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ RH+Y R P 
Sbjct: 12  QHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFR-PA 70

Query: 181 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRR 357
           G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+
Sbjct: 71  GIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRK 130

Query: 358 DLDRI 372
           DLDRI
Sbjct: 131 DLDRI 135


>Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical
           protein C10C6.3 protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +1

Query: 166 IRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIL 339
           I S +  K  T ++ G  R G  P      SGS  +K   +  A+K  EK +D GR L
Sbjct: 141 IESDLKEKPDTNVYTG-SREGYVPPPAKEGSGSGGKKKDMNNVAVKPDEKKKDSGRKL 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,094,028
Number of Sequences: 27780
Number of extensions: 214207
Number of successful extensions: 482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)