BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308F09f (521 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical pr... 147 4e-36 AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal pro... 147 4e-36 Z83217-2|CAB05680.2| 319|Caenorhabditis elegans Hypothetical pr... 27 8.1 >Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical protein T05F1.3 protein. Length = 146 Score = 147 bits (357), Expect = 4e-36 Identities = 72/125 (57%), Positives = 89/125 (71%), Gaps = 1/125 (0%) Frame = +1 Query: 1 QDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPV 180 Q + K++A LKK+GKVKVPE DLVK KELAP DPDWFY R A++ RH+Y R P Sbjct: 12 QHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFR-PA 70 Query: 181 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRR 357 G+ K++GG KR GV P+HF S+G+ RKA+Q LE +K VEK DG GRIL+ QGR+ Sbjct: 71 GIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRK 130 Query: 358 DLDRI 372 DLDRI Sbjct: 131 DLDRI 135 >AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal protein S19 protein. Length = 146 Score = 147 bits (357), Expect = 4e-36 Identities = 72/125 (57%), Positives = 89/125 (71%), Gaps = 1/125 (0%) Frame = +1 Query: 1 QDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPV 180 Q + K++A LKK+GKVKVPE DLVK KELAP DPDWFY R A++ RH+Y R P Sbjct: 12 QHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFR-PA 70 Query: 181 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRR 357 G+ K++GG KR GV P+HF S+G+ RKA+Q LE +K VEK DG GRIL+ QGR+ Sbjct: 71 GIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRK 130 Query: 358 DLDRI 372 DLDRI Sbjct: 131 DLDRI 135 >Z83217-2|CAB05680.2| 319|Caenorhabditis elegans Hypothetical protein C10C6.3 protein. Length = 319 Score = 27.1 bits (57), Expect = 8.1 Identities = 20/58 (34%), Positives = 27/58 (46%) Frame = +1 Query: 166 IRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIL 339 I S + K T ++ G R G P SGS +K + A+K EK +D GR L Sbjct: 141 IESDLKEKPDTNVYTG-SREGYVPPPAKEGSGSGGKKKDMNNVAVKPDEKKKDSGRKL 197 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,094,028 Number of Sequences: 27780 Number of extensions: 214207 Number of successful extensions: 482 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 465 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 478 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1017709248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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