BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308F09f (521 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ... 149 8e-37 At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi... 149 1e-36 At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ... 146 6e-36 At4g16095.1 68417.m02440 disease resistance protein-related cont... 29 1.4 At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote... 29 1.9 At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063... 29 2.5 At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /... 28 4.4 At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containi... 27 7.7 At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ... 27 7.7 >At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S RIBOSOMAL PROTEIN S19 - Oryza sativa, SWISSPROT:RS19_ORYSA Length = 143 Score = 149 bits (362), Expect = 8e-37 Identities = 65/120 (54%), Positives = 88/120 (73%) Frame = +1 Query: 13 VKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKT 192 VK A+HLK++GK+++P D+VKT R KELAPYDPDW+Y+R A++ R IY+R +GV Sbjct: 16 VKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYLRGGLGVGA 75 Query: 193 VTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 372 +I+GG KRNG P HFC+SSG IAR LQ LE + +VE GGR +T+ G+RDLD++ Sbjct: 76 FRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQV 135 >At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar to 40S ribosomal protein S19 GB:P40978 [Oryza sativa] Length = 143 Score = 149 bits (360), Expect = 1e-36 Identities = 63/120 (52%), Positives = 88/120 (73%) Frame = +1 Query: 13 VKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKT 192 VK A+HLK++GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +Y+R +GV Sbjct: 16 VKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGA 75 Query: 193 VTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 372 +I+GG KRNG P HFC+SSG IAR LQ LE + +VE GGR +T+ G+RDLD++ Sbjct: 76 FRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQV 135 >At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA Length = 143 Score = 146 bits (355), Expect = 6e-36 Identities = 61/122 (50%), Positives = 89/122 (72%) Frame = +1 Query: 7 KIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGV 186 + VK AAHLK++GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +Y+R +GV Sbjct: 14 EFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGV 73 Query: 187 KTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLD 366 +I+GG KRNG P HFC+SSG +AR LQ L+ + +V+ GGR +T+ G+RDLD Sbjct: 74 GAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLD 133 Query: 367 RI 372 ++ Sbjct: 134 QV 135 >At4g16095.1 68417.m02440 disease resistance protein-related contains weak similarity to rpp8 [Arabidopsis thaliana] gi|3901294|gb|AAC78631 Length = 187 Score = 29.5 bits (63), Expect = 1.4 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -2 Query: 328 HRPELSQQASMPPTIAKPCVQYCLM 254 H P L Q PP + C++YC M Sbjct: 86 HMPRLPDQHRFPPNLTNICLRYCCM 110 >At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein kinase, putative Length = 666 Score = 29.1 bits (62), Expect = 1.9 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = +1 Query: 28 AHLKKTGKVKVPEHMDLVK-TARFKELAPYDPDWFYVRCAAILRHIYIRS 174 +H + V P D + T F+ ++ ++ WF C+A++ H+ + S Sbjct: 15 SHSDSSSTVSCPNGTDFHQLTTVFRYVSGFNSSWFSSNCSAVITHVVLPS 64 >At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063: Domain of unknown function (DUF383) and PF04064: Domain of unknown function (DUF384) Length = 339 Score = 28.7 bits (61), Expect = 2.5 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = +1 Query: 244 FCRSSGSIARKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRI 372 FCRSSG A + + ++ + + K +DG ++L RR L +I Sbjct: 143 FCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQI 186 >At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein weak similarity to polygalacturonase PG1 [Glycine max] GI:5669846; contains PF00295: Glycosyl hydrolases family 28 Length = 444 Score = 27.9 bits (59), Expect = 4.4 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -1 Query: 263 LPDDLQKCEGVTPLRLRPPKILVTVFTPTGE 171 L D C G+ PLR R KI +T F G+ Sbjct: 21 LGDSEATCSGIVPLRYRYDKISITDFGGVGD 51 >At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 633 Score = 27.1 bits (57), Expect = 7.7 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Frame = +1 Query: 181 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVE--KVQDGGRILTTQGR 354 G + ++F G R+G PSHF +S A + LE K V ++ G +++ G Sbjct: 242 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 301 Query: 355 RDLD 366 LD Sbjct: 302 TLLD 305 >At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to DNA polymerase III holoenzyme tau subunit [Thermus thermophilus] GI:2583049 Length = 1218 Score = 27.1 bits (57), Expect = 7.7 Identities = 15/52 (28%), Positives = 24/52 (46%) Frame = -1 Query: 368 LSRSRLPCVVRMRXXXXXXXXXFNASNDCKALRAILPDDLQKCEGVTPLRLR 213 +S SRL C+ + + NA +D +DL+K G +PL L+ Sbjct: 178 ISSSRLDCLSKYQPRDDIVARNCNAGSDDTEEELSNSEDLRKVTGASPLLLK 229 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,505,238 Number of Sequences: 28952 Number of extensions: 196617 Number of successful extensions: 409 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 405 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 409 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 957410176 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -