Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ...   149   8e-37
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi...   149   1e-36
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ...   146   6e-36
At4g16095.1 68417.m02440 disease resistance protein-related cont...    29   1.4  
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote...    29   1.9  
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063...    29   2.5  
At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /...    28   4.4  
At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containi...    27   7.7  
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ...    27   7.7  

>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
           RIBOSOMAL PROTEIN S19 - Oryza sativa,
           SWISSPROT:RS19_ORYSA
          Length = 143

 Score =  149 bits (362), Expect = 8e-37
 Identities = 65/120 (54%), Positives = 88/120 (73%)
 Frame = +1

Query: 13  VKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKT 192
           VK  A+HLK++GK+++P   D+VKT R KELAPYDPDW+Y+R A++ R IY+R  +GV  
Sbjct: 16  VKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYLRGGLGVGA 75

Query: 193 VTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 372
             +I+GG KRNG  P HFC+SSG IAR  LQ LE + +VE    GGR +T+ G+RDLD++
Sbjct: 76  FRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQV 135


>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
           to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
          Length = 143

 Score =  149 bits (360), Expect = 1e-36
 Identities = 63/120 (52%), Positives = 88/120 (73%)
 Frame = +1

Query: 13  VKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKT 192
           VK  A+HLK++GK+++P   D+VKT + KELAPYDPDW+Y+R A++ R +Y+R  +GV  
Sbjct: 16  VKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGA 75

Query: 193 VTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 372
             +I+GG KRNG  P HFC+SSG IAR  LQ LE + +VE    GGR +T+ G+RDLD++
Sbjct: 76  FRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQV 135


>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
           ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
          Length = 143

 Score =  146 bits (355), Expect = 6e-36
 Identities = 61/122 (50%), Positives = 89/122 (72%)
 Frame = +1

Query: 7   KIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGV 186
           + VK  AAHLK++GK+++P   D+VKT + KELAPYDPDW+Y+R A++ R +Y+R  +GV
Sbjct: 14  EFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGV 73

Query: 187 KTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLD 366
               +I+GG KRNG  P HFC+SSG +AR  LQ L+ + +V+    GGR +T+ G+RDLD
Sbjct: 74  GAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLD 133

Query: 367 RI 372
           ++
Sbjct: 134 QV 135


>At4g16095.1 68417.m02440 disease resistance protein-related
           contains weak similarity to rpp8 [Arabidopsis thaliana]
           gi|3901294|gb|AAC78631
          Length = 187

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 328 HRPELSQQASMPPTIAKPCVQYCLM 254
           H P L  Q   PP +   C++YC M
Sbjct: 86  HMPRLPDQHRFPPNLTNICLRYCCM 110


>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 666

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 28  AHLKKTGKVKVPEHMDLVK-TARFKELAPYDPDWFYVRCAAILRHIYIRS 174
           +H   +  V  P   D  + T  F+ ++ ++  WF   C+A++ H+ + S
Sbjct: 15  SHSDSSSTVSCPNGTDFHQLTTVFRYVSGFNSSWFSSNCSAVITHVVLPS 64


>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
           Domain of unknown function (DUF383) and  PF04064: Domain
           of unknown function (DUF384)
          Length = 339

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 244 FCRSSGSIARKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRI 372
           FCRSSG  A    + + ++ + + K +DG ++L    RR L +I
Sbjct: 143 FCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQI 186


>At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase PG1 [Glycine max]
           GI:5669846; contains PF00295: Glycosyl hydrolases family
           28
          Length = 444

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 263 LPDDLQKCEGVTPLRLRPPKILVTVFTPTGE 171
           L D    C G+ PLR R  KI +T F   G+
Sbjct: 21  LGDSEATCSGIVPLRYRYDKISITDFGGVGD 51


>At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 633

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +1

Query: 181 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVE--KVQDGGRILTTQGR 354
           G +   ++F G  R+G  PSHF  +S   A  +   LE  K V    ++ G +++   G 
Sbjct: 242 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 301

Query: 355 RDLD 366
             LD
Sbjct: 302 TLLD 305


>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1218

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 368 LSRSRLPCVVRMRXXXXXXXXXFNASNDCKALRAILPDDLQKCEGVTPLRLR 213
           +S SRL C+ + +          NA +D         +DL+K  G +PL L+
Sbjct: 178 ISSSRLDCLSKYQPRDDIVARNCNAGSDDTEEELSNSEDLRKVTGASPLLLK 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,505,238
Number of Sequences: 28952
Number of extensions: 196617
Number of successful extensions: 409
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)