Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F08f
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    31   0.063
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   3.1  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    25   7.3  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   7.3  

>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 31.5 bits (68), Expect = 0.063
 Identities = 14/67 (20%), Positives = 32/67 (47%)
 Frame = +1

Query: 94  KNRESPTDFIVKFSVMKKSISTPDITLEDSPYSTAGLSNLPKNKSVPRNLEEPYAVVKVD 273
           + + S T  +   + +KK +STP+  +E+        SN P +K +P++++        +
Sbjct: 554 REQTSITSGVPPSNRLKKHVSTPEKIVEERSIDEVSQSNTPSSKQLPQSVDGKTVTANAN 613

Query: 274 GNSAXKK 294
             +  K+
Sbjct: 614 STTVAKQ 620


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +1

Query: 100 RESPTDFIVKFSVMKKSISTPDITLEDSPYSTAGLSNLPKNKSVPRNLEEP 252
           +  P  F +    +K    +   +   SP S+ G   L ++ S+P ++E+P
Sbjct: 234 KRPPIQFSISSDYIKPVDKSDQTSNVPSPSSSVGSLRLYRSPSIPNDVEQP 284


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
            Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 154  STPDITLEDSPYSTAGLSNLP-KNKSVPRN-LEEPYAVVKVDGNSAXKKLE 300
            ST D TL+    +  G++     N++   N L +P +++K DG+    K+E
Sbjct: 869  STGDPTLDRVRAAVGGIAARAFANQTAQSNKLTQPISIIKTDGDEYKAKME 919


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 139 MKKSI-STPDITLEDSPYSTAGLSNLPKNKSVPRNLE 246
           +K SI + P +T E   Y +A  SNLP N   P   E
Sbjct: 137 VKSSIPAIPRVTFERLCYESAIASNLPPNALSPLEAE 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.133    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,313
Number of Sequences: 5004
Number of extensions: 24978
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)