BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308F08f (456 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 31 0.063 SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 26 3.1 SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 7.3 SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 25 7.3 >SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 791 Score = 31.5 bits (68), Expect = 0.063 Identities = 14/67 (20%), Positives = 32/67 (47%) Frame = +1 Query: 94 KNRESPTDFIVKFSVMKKSISTPDITLEDSPYSTAGLSNLPKNKSVPRNLEEPYAVVKVD 273 + + S T + + +KK +STP+ +E+ SN P +K +P++++ + Sbjct: 554 REQTSITSGVPPSNRLKKHVSTPEKIVEERSIDEVSQSNTPSSKQLPQSVDGKTVTANAN 613 Query: 274 GNSAXKK 294 + K+ Sbjct: 614 STTVAKQ 620 >SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1082 Score = 25.8 bits (54), Expect = 3.1 Identities = 12/51 (23%), Positives = 24/51 (47%) Frame = +1 Query: 100 RESPTDFIVKFSVMKKSISTPDITLEDSPYSTAGLSNLPKNKSVPRNLEEP 252 + P F + +K + + SP S+ G L ++ S+P ++E+P Sbjct: 234 KRPPIQFSISSDYIKPVDKSDQTSNVPSPSSSVGSLRLYRSPSIPNDVEQP 284 >SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosaccharomyces pombe|chr 3|||Manual Length = 1014 Score = 24.6 bits (51), Expect = 7.3 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = +1 Query: 154 STPDITLEDSPYSTAGLSNLP-KNKSVPRN-LEEPYAVVKVDGNSAXKKLE 300 ST D TL+ + G++ N++ N L +P +++K DG+ K+E Sbjct: 869 STGDPTLDRVRAAVGGIAARAFANQTAQSNKLTQPISIIKTDGDEYKAKME 919 >SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1000 Score = 24.6 bits (51), Expect = 7.3 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Frame = +1 Query: 139 MKKSI-STPDITLEDSPYSTAGLSNLPKNKSVPRNLE 246 +K SI + P +T E Y +A SNLP N P E Sbjct: 137 VKSSIPAIPRVTFERLCYESAIASNLPPNALSPLEAE 173 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.133 0.382 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,527,313 Number of Sequences: 5004 Number of extensions: 24978 Number of successful extensions: 81 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 81 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 170285640 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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