BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308F08f (456 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_07_0298 + 29072111-29072169,29072281-29072518,29072660-290727... 30 0.77 03_06_0415 - 33775143-33775305,33775438-33775565,33775654-337757... 30 1.0 04_04_1287 - 32390422-32391588,32392472-32392645 29 1.8 09_04_0298 + 16475693-16475849,16476148-16476265,16476364-164764... 27 7.2 02_05_0959 + 33086498-33086544,33087295-33087967,33088665-330890... 27 9.5 >05_07_0298 + 29072111-29072169,29072281-29072518,29072660-29072740, 29072831-29072897,29073055-29073191,29073319-29073321 Length = 194 Score = 30.3 bits (65), Expect = 0.77 Identities = 22/62 (35%), Positives = 31/62 (50%) Frame = +1 Query: 25 KKSEISSSSFQCFCDSGACTLHCKNRESPTDFIVKFSVMKKSISTPDITLEDSPYSTAGL 204 +KS+ S +CF +S CT CK E F VK S +S + PD D +T GL Sbjct: 113 RKSKCSKLYCECFKNSVGCTAKCKCLECSNSFGVKNS---ESSNKPD---PDDKSATDGL 166 Query: 205 SN 210 ++ Sbjct: 167 TH 168 >03_06_0415 - 33775143-33775305,33775438-33775565,33775654-33775761, 33775809-33775909,33776265-33776805,33777290-33777847 Length = 532 Score = 29.9 bits (64), Expect = 1.0 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 9/77 (11%) Frame = +1 Query: 97 NRESPTDFIVKFSVMK----KSISTP-----DITLEDSPYSTAGLSNLPKNKSVPRNLEE 249 + + + ++VKF + K +SI+T D +LED LS + KNKS+P ++E Sbjct: 225 DEDGGSGYLVKFKIAKVVPEQSIATDHAGEYDESLEDD-IKKKRLSKVSKNKSLPYEVDE 283 Query: 250 PYAVVKVDGNSAXKKLE 300 + + + G KKL+ Sbjct: 284 DFTMYR-SGRDGRKKLK 299 >04_04_1287 - 32390422-32391588,32392472-32392645 Length = 446 Score = 29.1 bits (62), Expect = 1.8 Identities = 15/46 (32%), Positives = 20/46 (43%) Frame = +1 Query: 97 NRESPTDFIVKFSVMKKSISTPDITLEDSPYSTAGLSNLPKNKSVP 234 N + D +V S STP T E PY+T + P+ S P Sbjct: 223 NENATVDTVVVDKYANSSDSTPATTEEPHPYNTTASESNPQENSSP 268 >09_04_0298 + 16475693-16475849,16476148-16476265,16476364-16476467, 16478794-16478808,16479276-16479481,16479567-16479719, 16479842-16480123 Length = 344 Score = 27.1 bits (57), Expect = 7.2 Identities = 11/32 (34%), Positives = 21/32 (65%) Frame = -1 Query: 138 NRKFHNEIRGRLTIFTMKGAGTGITKALKRRR 43 + KF+N ++ ++T + + A G+TKA K R+ Sbjct: 256 DNKFNNNLKKQITGWNLGKAVQGVTKAFKLRK 287 >02_05_0959 + 33086498-33086544,33087295-33087967,33088665-33089058, 33089140-33089210,33089373-33089497,33089705-33089821, 33094128-33094238,33094321-33094413,33094726-33094984, 33095067-33095189 Length = 670 Score = 26.6 bits (56), Expect = 9.5 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 6/77 (7%) Frame = +1 Query: 7 DFEGLVKKSEISSSSFQCFCDSGACTLHCKNRESPTDFIVKFSVMKK------SISTPDI 168 DF GL K+ + S +S T +R+ P D I FS M+K +S + Sbjct: 72 DFRGLSGKTNLGRSESSKSNNSDDETHQFWHRQLPDDIIPDFSDMEKVEQQHGELSFSGL 131 Query: 169 TLEDSPYSTAGLSNLPK 219 +L P+ SNL + Sbjct: 132 SLNAPPFFGTAASNLSR 148 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.133 0.382 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,392,456 Number of Sequences: 37544 Number of extensions: 144016 Number of successful extensions: 330 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 326 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 330 length of database: 14,793,348 effective HSP length: 76 effective length of database: 11,940,004 effective search space used: 895500300 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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