Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F08f
         (456 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24494| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_786| Best HMM Match : EGF (HMM E-Value=0)                           28   3.2  
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   7.4  
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 27   9.7  
SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08)             27   9.7  
SB_4446| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  

>SB_24494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 118 FIVKFSVMKKSISTPDITLEDSPYSTAGLS 207
           ++VKF   +KS   PD  L+D PY T G S
Sbjct: 82  YVVKFFCARKS--PPDTPLQDQPYVTIGAS 109


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/82 (21%), Positives = 31/82 (37%)
 Frame = +1

Query: 40   SSSSFQCFCDSGACTLHCKNRESPTDFIVKFSVMKKSISTPDITLEDSPYSTAGLSNLPK 219
            +S++   F D+   T   K          + + + ++I TP+ T      S    + LPK
Sbjct: 2825 ASATMSTFTDAADTTAPSKTGAPEITAAPETTAVPETIETPETTSAPETTSAPETTALPK 2884

Query: 220  NKSVPRNLEEPYAVVKVDGNSA 285
              +VP     P    K +   A
Sbjct: 2885 TTAVPETTTPPETTAKPETTGA 2906


>SB_786| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1427

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 34  EISSSSFQCFCDSGACTLHCKNRESP 111
           E++   +QC CD+G    +C+N  SP
Sbjct: 178 EVNDDDYQCACDAGYTGKNCENFCSP 203


>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1589

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 133 SVMKKSISTPDITLEDSPYSTAGLSNLPKN-KSVPRNLEEPYAVVKVDGNSAXKKLEXTF 309
           S+  +S++TP I L+D    T    ++ K+     R L+ PY   + +       +E  F
Sbjct: 709 SICSRSVTTPAIALQDITTVTRETPDVVKSWTHSERRLDSPYKQRRGEEKKNLDTIERRF 768

Query: 310 SXK 318
           S K
Sbjct: 769 SRK 771


>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 756

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = +1

Query: 64  CDSGACTLHCKNRESPTDFIVKFSVMKKSISTPDITLED-SPYSTAGLSNLPKNKSVPRN 240
           C  G C  +C N+ + +D I      K  +   D+ L + +P  T         +S    
Sbjct: 311 CTQGCCCKNCSNKSNSSDDIHHEKSSKTELKNQDLPLFNFNPIRTQNRKCYSSEESNQDE 370

Query: 241 LEEPYAVVK 267
             EP++ V+
Sbjct: 371 PMEPFSCVE 379


>SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08)
          Length = 504

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 228 RAAEPRRTVRCCQSGRX*CP 287
           R+AE +R +RC  +GR  CP
Sbjct: 307 RSAESQRLIRCACNGRNACP 326


>SB_4446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 133 SVMKKSISTPDITLEDSPYSTAGLSNLPKNKSVPRNLEEPYAVVKVDGN 279
           S +K SIS+   ++   PYS +G      ++S  R      ++V + GN
Sbjct: 283 SFLKNSISSSRNSIAPYPYSQSGTKGYQSSQSGVRKSASSNSLVSLSGN 331


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.133    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,091,582
Number of Sequences: 59808
Number of extensions: 173689
Number of successful extensions: 432
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)