Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F08f
         (456 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AF016439-2|AAB65897.1|  176|Caenorhabditis elegans Hypothetical ...    28   2.8  
Z81495-8|CAB04063.1|  239|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AC024757-10|AAF59455.1|  384|Caenorhabditis elegans Hypothetical...    27   8.6  
AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical
           protein K10D2.3 protein.
          Length = 1425

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 157 TPDITLEDSPYSTAGLSNLPKNKSVPRNLEEPYAVVKVDGNSAXKKLE 300
           T D+TL DS Y+ A   ++P+   +   LE+    +  DG+ A   +E
Sbjct: 375 TYDVTLPDSDYNVAYTMSIPEGTPIFALLEQVRKKIADDGHPADHSME 422


>AF016439-2|AAB65897.1|  176|Caenorhabditis elegans Hypothetical
           protein R02F11.1 protein.
          Length = 176

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 40  SSSSFQCFCDSGACTLHCKNRESPTDFI 123
           SS+++ C C SG  T  C N+  PT F+
Sbjct: 107 SSNNYCCRCQSGNSTGPCVNQVCPTGFM 134


>Z81495-8|CAB04063.1|  239|Caenorhabditis elegans Hypothetical
           protein F08G2.8 protein.
          Length = 239

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 141 HNRKFHNEIRGRLTIFTMK 85
           H RKF+ ++R RL ++ MK
Sbjct: 79  HGRKFYGDLRRRLILYVMK 97


>AC024757-10|AAF59455.1|  384|Caenorhabditis elegans Hypothetical
           protein Y37E11AL.1 protein.
          Length = 384

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 105 VAHGFHCEIFCYEEKYINS*YYFRGF-SLFDS 197
           +A+GF   +F     Y NS ++F GF +LFD+
Sbjct: 36  IANGFLATLFLTRTIYRNSPFFFLGFVALFDT 67


>AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical
           protein ZK105.6 protein.
          Length = 479

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 130 FSVMKKSISTPDITLEDSPYST 195
           F ++K+  STPD TL  S Y T
Sbjct: 74  FQIVKEQCSTPDYTLISSNYDT 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.133    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,425,744
Number of Sequences: 27780
Number of extensions: 138513
Number of successful extensions: 461
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)