Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F08f
         (456 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29970.1 68415.m03645 heat shock protein-related contains sim...    28   3.4  
At1g65840.1 68414.m07470 amine oxidase family protein similar to...    27   4.5  

>At2g29970.1 68415.m03645 heat shock protein-related contains
           similarity to 101 kDa heat shock protein; HSP101
           [Triticum aestivum] gi|11561808|gb|AAC83689
          Length = 1002

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 124 VKFSVMKKSISTPDITLE-DSPYSTAGLSNLPKNKSVPRNLEEPYAVVKVDGNS 282
           V    +  S STP  T+E D P S + ++ + ++++  R   E Y + ++ GN+
Sbjct: 81  VSLDRLPSSKSTPTTTVEEDPPVSNSLMAAIKRSQATQRRHPETYHLHQIHGNN 134


>At1g65840.1 68414.m07470 amine oxidase family protein similar to
           polyamine oxidase SP:O64411 [Zea mays]; contains Pfam
           profile PF01593 amine oxidase, flavin-containing
          Length = 497

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +1

Query: 49  SFQCFCDSGACTLHCKNRESP-TDFIVKFSVMKKSISTPDITLEDSPYSTAGLSNLPKNK 225
           SF C  D GA  LH  + E+P    I +  +     S  D  L D    + GL ++  NK
Sbjct: 72  SFGCPVDMGASWLHGVSDENPLAPIIRRLGLTLYRTSGDDSILYDHDLESYGLFDMHGNK 131

Query: 226 SVPR 237
             P+
Sbjct: 132 IPPQ 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.133    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,860,568
Number of Sequences: 28952
Number of extensions: 125648
Number of successful extensions: 314
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)