Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F05f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    26   0.18 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    26   0.18 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    26   0.18 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    26   0.18 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    26   0.18 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    26   0.18 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           26   0.18 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    26   0.18 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    26   0.18 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   0.54 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.6  
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    22   3.8  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.7  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   8.7  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -1

Query: 506 QRARCQCTEPGPTC-QPSAQWKLGPRGEPEPTSTXQVSSHALSALAPGALITPT 348
           Q+AR Q + PG     P+A     P     P    Q   H  +A APG  + PT
Sbjct: 16  QQARDQQSSPGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPT 69


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -1

Query: 506 QRARCQCTEPGPTC-QPSAQWKLGPRGEPEPTSTXQVSSHALSALAPGALITPT 348
           Q+AR Q + PG     P+A     P     P    Q   H  +A APG  + PT
Sbjct: 16  QQARDQQSSPGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPT 69


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -1

Query: 506 QRARCQCTEPGPTC-QPSAQWKLGPRGEPEPTSTXQVSSHALSALAPGALITPT 348
           Q+AR Q + PG     P+A     P     P    Q   H  +A APG  + PT
Sbjct: 16  QQARDQQSSPGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPT 69


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -1

Query: 506 QRARCQCTEPGPTC-QPSAQWKLGPRGEPEPTSTXQVSSHALSALAPGALITPT 348
           Q+AR Q + PG     P+A     P     P    Q   H  +A APG  + PT
Sbjct: 16  QQARDQQSSPGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPT 69


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -1

Query: 506 QRARCQCTEPGPTC-QPSAQWKLGPRGEPEPTSTXQVSSHALSALAPGALITPT 348
           Q+AR Q + PG     P+A     P     P    Q   H  +A APG  + PT
Sbjct: 16  QQARDQQSSPGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPT 69


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
 Frame = -1

Query: 467 CQPSAQWKLGPRGEPEPTSTXQVSSHALSALAPGALITPT-PFLPAESTSMLSTPAPARP 291
           C    +W+ G  G PE     +       ++ P +  +P  P   A S +    P P+ P
Sbjct: 8   CPKRMKWEGGEEGSPEEGDKLE-GDEDTGSMTPNSAASPAPPEEEAASPTPGDVPTPSSP 66

Query: 290 TTFSFTP 270
            + S  P
Sbjct: 67  RSISEDP 73


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -1

Query: 506 QRARCQCTEPGPTC-QPSAQWKLGPRGEPEPTSTXQVSSHALSALAPGALITPT 348
           Q+AR Q + PG     P+A     P     P    Q   H  +A APG  + PT
Sbjct: 16  QQARDQQSSPGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPT 69


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -1

Query: 506 QRARCQCTEPGPTC-QPSAQWKLGPRGEPEPTSTXQVSSHALSALAPGALITPT 348
           Q+AR Q + PG     P+A     P     P    Q   H  +A APG  + PT
Sbjct: 16  QQARDQQSSPGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPT 69


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -1

Query: 506 QRARCQCTEPGPTC-QPSAQWKLGPRGEPEPTSTXQVSSHALSALAPGALITPT 348
           Q+AR Q + PG     P+A     P     P    Q   H  +A APG  + PT
Sbjct: 16  QQARDQQSSPGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPT 69


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 449 WKLGPRGEPEPTST 408
           WK  P+G P P+ST
Sbjct: 67  WKKSPQGAPSPSST 80


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 96  GFDRRRGWRQVCRTPQRLRNRHHYQG 173
           G D++  W + CR  ++L  R ++ G
Sbjct: 579 GLDQQNQWCKPCRPREQLTWRRNFHG 604


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 96  GFDRRRGWRQVCRTPQRLRNRHHYQG 173
           G D++  W + CR  ++L  R ++ G
Sbjct: 471 GLDQQNQWCKPCRPREQLTWRRNFHG 496


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 138 PQRLRNRHH 164
           PQRLR RHH
Sbjct: 21  PQRLRIRHH 29


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 4/10 (40%), Positives = 7/10 (70%)
 Frame = +3

Query: 417 WFWLATWSQL 446
           W+W+  WS +
Sbjct: 629 WYWVMDWSDM 638


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 316 CPHQLQHDRPPSASRLRPTP 257
           C  QLQ  +  SASR   +P
Sbjct: 182 CRQQLQQQQNKSASRTTTSP 201


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.132    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,317
Number of Sequences: 336
Number of extensions: 2261
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)