BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308F05f (521 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 21 5.8 AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 21 5.8 AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 5.8 AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 7.7 >U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive opsin protein. Length = 377 Score = 21.4 bits (43), Expect = 5.8 Identities = 6/12 (50%), Positives = 9/12 (75%) Frame = +3 Query: 417 WFWLATWSQLPL 452 WFW+ ++ LPL Sbjct: 179 WFWVTPFTVLPL 190 >AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin protein. Length = 377 Score = 21.4 bits (43), Expect = 5.8 Identities = 6/12 (50%), Positives = 9/12 (75%) Frame = +3 Query: 417 WFWLATWSQLPL 452 WFW+ ++ LPL Sbjct: 179 WFWVTPFTVLPL 190 >AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. Length = 1598 Score = 21.4 bits (43), Expect = 5.8 Identities = 11/33 (33%), Positives = 15/33 (45%) Frame = -1 Query: 422 EPTSTXQVSSHALSALAPGALITPTPFLPAEST 324 EPTS A +A +PG L +P S+ Sbjct: 901 EPTSAAFAQGFATAASSPGLLERASPAFSGTSS 933 >AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor protein. Length = 1370 Score = 21.0 bits (42), Expect = 7.7 Identities = 7/24 (29%), Positives = 16/24 (66%) Frame = +1 Query: 310 VDNIDVDSAGKKGVGVINAPGANA 381 +DN+ ++G +GV +++A A + Sbjct: 709 LDNVMCRTSGPRGVAIVSASTARS 732 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.316 0.132 0.396 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 132,160 Number of Sequences: 438 Number of extensions: 2804 Number of successful extensions: 5 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5 length of database: 146,343 effective HSP length: 54 effective length of database: 122,691 effective search space used: 14600229 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.6 bits)
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