Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz...    72   6e-14
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo...    29   0.56 
SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces pom...    26   3.9  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   3.9  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    25   5.2  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    25   6.8  

>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 71.7 bits (168), Expect = 6e-14
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
 Frame = +3

Query: 210 VPRLSYFPLVIDKMKRHFLRFISQENSDSEMWLDFNGQPLKWHYPIGFLYDLYCGNDPQL 389
           VPR SYF  ++  ++R     ++     SE WLD+NG PLKWH+P+G L+DL    DP  
Sbjct: 36  VPRQSYFAQILPNVQR----LLAPSIPLSECWLDYNGVPLKWHWPVGLLFDLLTVFDPDT 91

Query: 390 P-----WTLTVHFTKFPEDILLHCPNKDVVEAHYMSTVKEADVLKH 512
           P     W + +    FP   +L     D    ++ + +KE+D +++
Sbjct: 92  PRAPVLWRIQLRSGLFPTTKILQMETMDTFRTYFFNCLKESDYVRN 137


>SPAC20G4.04c |hus1||checkpoint clamp complex protein
           Hus1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 171 IMEIQQPDP-FYVMVPRLSYFPLVIDKMKRHFLRFISQENSDSEMWLDFN 317
           I E   P+P  ++ +P+L++   V+DK K    R I   N   E+ L  N
Sbjct: 140 IKEPTAPEPDCHIFLPQLNFLRHVVDKYKSLSDRIIMSANMSGELQLSVN 189


>SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 221 KSRHHNVKWIRLLNFHYFFLSKMKTYR*FSIPYFSKYLPVV 99
           K R HN+ W+R  N+    + ++      SI  FS   P+V
Sbjct: 94  KKRPHNLTWVRFFNYRVLDMIELGIVNYKSIQSFSA-TPIV 133


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 500  ISLFHCRHIMCFYYIFVWAMKKNVFRELCE 411
            + LF   +++ +Y I V   K N+F ELC+
Sbjct: 1173 LELFDHPNVVSYYGIEVHREKVNIFMELCQ 1202


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 504 VHQPLSL*TYNVLLLHLCLGNEEECLQGTL*SVLSKSRVVED 379
           V   LS  TYNVL   LC+  E+  L  T  +VL+ ++   D
Sbjct: 241 VFPTLSQDTYNVLRACLCVSPEKRSLAKTREAVLAVTKWTTD 282


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = -2

Query: 136 FPSHISRSTSLSLAILIVINMLITEHYYFLMLIVDALQPIN 14
           FP H   +    + +L+++   +    Y L+ I++  QPI+
Sbjct: 8   FPLHHKLALPFRIGLLVIVGTWLWSVCYHLIYILNRYQPIS 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,007
Number of Sequences: 5004
Number of extensions: 49457
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)