BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308F04f (521 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_01_0128 - 930461-930828,931223-931369,931567-931704,931888-93... 120 9e-28 11_06_0647 + 25870470-25870744,25870765-25871533 32 0.32 12_02_1283 - 27532143-27532517,27532602-27532906,27533053-275333... 29 3.0 03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,772... 29 3.0 >02_01_0128 - 930461-930828,931223-931369,931567-931704,931888-931975, 932068-932157,932249-932315,933411-933535,934079-934213 Length = 385 Score = 120 bits (288), Expect = 9e-28 Identities = 52/130 (40%), Positives = 76/130 (58%) Frame = +3 Query: 108 EVLREIWDGKLPICFHLAQEEIMEIQQPDPFYVMVPRLSYFPLVIDKMKRHFLRFISQEN 287 E R +W G +P+ HL ++ + P PF + PR+ Y PL++ +K HF + Sbjct: 14 EAARRVWGGAVPLQVHLHDADVTTLPPPPPFLTLGPRIGYLPLLVPIIKAHFSSTLPP-- 71 Query: 288 SDSEMWLDFNGQPLKWHYPIGFLYDLYCGNDPQLPWTLTVHFTKFPEDILLHCPNKDVVE 467 +W ++ G PLKW+ PIG LYDL C DP+ PW LTVHF +P +IL C +D V+ Sbjct: 72 GIDTVWFEYKGLPLKWYIPIGVLYDLLCA-DPERPWNLTVHFRGYPSEILTLCDGEDSVK 130 Query: 468 AHYMSTVKEA 497 YM+++KEA Sbjct: 131 WSYMNSLKEA 140 >11_06_0647 + 25870470-25870744,25870765-25871533 Length = 347 Score = 31.9 bits (69), Expect = 0.32 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = +3 Query: 207 MVPRLSYFPLVIDKMKRHFLRFISQENSDSEMWLDF 314 +VP SY+ LV +K KRH LR +E + E L F Sbjct: 41 IVPLYSYYVLVEEKQKRHLLRPSRKEKEEKEHLLVF 76 >12_02_1283 - 27532143-27532517,27532602-27532906,27533053-27533311, 27534412-27534618,27534726-27535181,27535866-27535963, 27536657-27536785,27537371-27537605,27538932-27539039, 27539110-27539160,27539261-27539445,27540207-27540274, 27541535-27541600,27541678-27541730,27542536-27542653, 27542743-27542844,27543525-27543682,27543763-27543840, 27543978-27544069,27544308-27544458 Length = 1097 Score = 28.7 bits (61), Expect = 3.0 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 9/81 (11%) Frame = +3 Query: 147 CFHLAQEEIMEIQQPDPFY---------VMVPRLSYFPLVIDKMKRHFLRFISQENSDSE 299 CF + E+I +++Q DP ++V RL P++ +KM H LR + E S Sbjct: 761 CFFIEAEKIEQLRQSDPSIEIFLWQESALVVARL-LLPMMFEKMATHELRVLITERSTMN 819 Query: 300 MWLDFNGQPLKWHYPIGFLYD 362 +++ L+ ++ IG L + Sbjct: 820 IYIKGEEIELEQNF-IGILLE 839 >03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641, 7724751-7725072,7725183-7725661,7726157-7726430, 7726598-7726884,7726966-7727388,7727545-7727890, 7728011-7728328,7729817-7731081 Length = 1803 Score = 28.7 bits (61), Expect = 3.0 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = -3 Query: 456 LCLGNEEECLQGTL*SVLSKSRVVEDHYHNTNRTKILWDS 337 LC + EE + V S +++VE ++N NR +++W S Sbjct: 1105 LCKVSMEELRSASDPRVFSLTKIVEIAHYNMNRIRLVWSS 1144 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,711,698 Number of Sequences: 37544 Number of extensions: 285116 Number of successful extensions: 617 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 600 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 615 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1142636160 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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