Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0128 - 930461-930828,931223-931369,931567-931704,931888-93...   120   9e-28
11_06_0647 + 25870470-25870744,25870765-25871533                       32   0.32 
12_02_1283 - 27532143-27532517,27532602-27532906,27533053-275333...    29   3.0  
03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,772...    29   3.0  

>02_01_0128 -
           930461-930828,931223-931369,931567-931704,931888-931975,
           932068-932157,932249-932315,933411-933535,934079-934213
          Length = 385

 Score =  120 bits (288), Expect = 9e-28
 Identities = 52/130 (40%), Positives = 76/130 (58%)
 Frame = +3

Query: 108 EVLREIWDGKLPICFHLAQEEIMEIQQPDPFYVMVPRLSYFPLVIDKMKRHFLRFISQEN 287
           E  R +W G +P+  HL   ++  +  P PF  + PR+ Y PL++  +K HF   +    
Sbjct: 14  EAARRVWGGAVPLQVHLHDADVTTLPPPPPFLTLGPRIGYLPLLVPIIKAHFSSTLPP-- 71

Query: 288 SDSEMWLDFNGQPLKWHYPIGFLYDLYCGNDPQLPWTLTVHFTKFPEDILLHCPNKDVVE 467
               +W ++ G PLKW+ PIG LYDL C  DP+ PW LTVHF  +P +IL  C  +D V+
Sbjct: 72  GIDTVWFEYKGLPLKWYIPIGVLYDLLCA-DPERPWNLTVHFRGYPSEILTLCDGEDSVK 130

Query: 468 AHYMSTVKEA 497
             YM+++KEA
Sbjct: 131 WSYMNSLKEA 140


>11_06_0647 + 25870470-25870744,25870765-25871533
          Length = 347

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 207 MVPRLSYFPLVIDKMKRHFLRFISQENSDSEMWLDF 314
           +VP  SY+ LV +K KRH LR   +E  + E  L F
Sbjct: 41  IVPLYSYYVLVEEKQKRHLLRPSRKEKEEKEHLLVF 76


>12_02_1283 -
           27532143-27532517,27532602-27532906,27533053-27533311,
           27534412-27534618,27534726-27535181,27535866-27535963,
           27536657-27536785,27537371-27537605,27538932-27539039,
           27539110-27539160,27539261-27539445,27540207-27540274,
           27541535-27541600,27541678-27541730,27542536-27542653,
           27542743-27542844,27543525-27543682,27543763-27543840,
           27543978-27544069,27544308-27544458
          Length = 1097

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
 Frame = +3

Query: 147 CFHLAQEEIMEIQQPDPFY---------VMVPRLSYFPLVIDKMKRHFLRFISQENSDSE 299
           CF +  E+I +++Q DP           ++V RL   P++ +KM  H LR +  E S   
Sbjct: 761 CFFIEAEKIEQLRQSDPSIEIFLWQESALVVARL-LLPMMFEKMATHELRVLITERSTMN 819

Query: 300 MWLDFNGQPLKWHYPIGFLYD 362
           +++      L+ ++ IG L +
Sbjct: 820 IYIKGEEIELEQNF-IGILLE 839


>03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,
            7724751-7725072,7725183-7725661,7726157-7726430,
            7726598-7726884,7726966-7727388,7727545-7727890,
            7728011-7728328,7729817-7731081
          Length = 1803

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 456  LCLGNEEECLQGTL*SVLSKSRVVEDHYHNTNRTKILWDS 337
            LC  + EE    +   V S +++VE  ++N NR +++W S
Sbjct: 1105 LCKVSMEELRSASDPRVFSLTKIVEIAHYNMNRIRLVWSS 1144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,711,698
Number of Sequences: 37544
Number of extensions: 285116
Number of successful extensions: 617
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)