Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28849| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0)                       29   3.1  
SB_24622| Best HMM Match : F5_F8_type_C (HMM E-Value=7.4e-17)          28   5.4  
SB_15615| Best HMM Match : SAMP (HMM E-Value=0.06)                     27   7.1  

>SB_28849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -2

Query: 151 KHIGSFPSHISRSTSLSLAILIVINMLITEHYYFLMLIVDAL 26
           KH G F S I+    +++ +++V  M++ E    +M++VD +
Sbjct: 37  KHYGDFNSVIAVDYHMAMLMMVVEMMVVMEMAMIMMIVVDVV 78


>SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 890

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 261 FLRFISQENSDSEMWLDFNGQPLKWHYPIGFLYDLYCGN 377
           +LR +S E S   + LD NG P    Y IG+ +D    N
Sbjct: 567 YLRHVSFEGSTGHVTLDENGDPKHAFYDIGY-FDFRLSN 604


>SB_24622| Best HMM Match : F5_F8_type_C (HMM E-Value=7.4e-17)
          Length = 897

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 321 QPLKWHYPIGFLYDLYCGNDPQLPWTLTVHFTKFP 425
           QP  WH  IG   +LY G  P   +T  V   KFP
Sbjct: 273 QPQAWHGNIGLRVELY-GCKPGFRFTARVLLLKFP 306


>SB_15615| Best HMM Match : SAMP (HMM E-Value=0.06)
          Length = 932

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 195 DQVVEFPLFLLEQDENISVVFHPIFLEV 112
           D V EF    +E+DE + + FHP+  EV
Sbjct: 776 DPVTEFAGLCIEEDELLCIKFHPLQDEV 803


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,307,379
Number of Sequences: 59808
Number of extensions: 360309
Number of successful extensions: 823
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)