BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308F04f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_28849| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3 SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0) 29 3.1 SB_24622| Best HMM Match : F5_F8_type_C (HMM E-Value=7.4e-17) 28 5.4 SB_15615| Best HMM Match : SAMP (HMM E-Value=0.06) 27 7.1 >SB_28849| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 257 Score = 29.1 bits (62), Expect = 2.3 Identities = 12/42 (28%), Positives = 25/42 (59%) Frame = -2 Query: 151 KHIGSFPSHISRSTSLSLAILIVINMLITEHYYFLMLIVDAL 26 KH G F S I+ +++ +++V M++ E +M++VD + Sbjct: 37 KHYGDFNSVIAVDYHMAMLMMVVEMMVVMEMAMIMMIVVDVV 78 >SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0) Length = 890 Score = 28.7 bits (61), Expect = 3.1 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +3 Query: 261 FLRFISQENSDSEMWLDFNGQPLKWHYPIGFLYDLYCGN 377 +LR +S E S + LD NG P Y IG+ +D N Sbjct: 567 YLRHVSFEGSTGHVTLDENGDPKHAFYDIGY-FDFRLSN 604 >SB_24622| Best HMM Match : F5_F8_type_C (HMM E-Value=7.4e-17) Length = 897 Score = 27.9 bits (59), Expect = 5.4 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = +3 Query: 321 QPLKWHYPIGFLYDLYCGNDPQLPWTLTVHFTKFP 425 QP WH IG +LY G P +T V KFP Sbjct: 273 QPQAWHGNIGLRVELY-GCKPGFRFTARVLLLKFP 306 >SB_15615| Best HMM Match : SAMP (HMM E-Value=0.06) Length = 932 Score = 27.5 bits (58), Expect = 7.1 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -3 Query: 195 DQVVEFPLFLLEQDENISVVFHPIFLEV 112 D V EF +E+DE + + FHP+ EV Sbjct: 776 DPVTEFAGLCIEEDELLCIKFHPLQDEV 803 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,307,379 Number of Sequences: 59808 Number of extensions: 360309 Number of successful extensions: 823 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 793 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 823 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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