BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308F04f (521 letters) Database: mosquito 2352 sequences; 563,979 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcript... 27 0.50 AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein. 23 8.2 AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein. 23 8.2 AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein. 23 8.2 >AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcriptase protein. Length = 988 Score = 26.6 bits (56), Expect = 0.50 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Frame = -3 Query: 165 LEQDEN-ISVVFHPIFLEVPPCRWP 94 +E+D N + + + +FLE PP WP Sbjct: 373 MERDANKLQFIVNELFLERPPMEWP 397 >AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein. Length = 3320 Score = 22.6 bits (46), Expect = 8.2 Identities = 8/18 (44%), Positives = 13/18 (72%) Frame = +3 Query: 264 LRFISQENSDSEMWLDFN 317 LRF+ Q+NS + M+ +N Sbjct: 1912 LRFVVQQNSSNVMYYTYN 1929 >AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein. Length = 3318 Score = 22.6 bits (46), Expect = 8.2 Identities = 8/18 (44%), Positives = 13/18 (72%) Frame = +3 Query: 264 LRFISQENSDSEMWLDFN 317 LRF+ Q+NS + M+ +N Sbjct: 1913 LRFVVQQNSSNVMYYTYN 1930 >AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein. Length = 2259 Score = 22.6 bits (46), Expect = 8.2 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = +3 Query: 354 LYDLYCGNDPQLPWTLTV 407 L+DLYC N P P T+ Sbjct: 1548 LHDLYCLNRPFFPERYTI 1565 Database: mosquito Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 563,979 Number of sequences in database: 2352 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 565,821 Number of Sequences: 2352 Number of extensions: 11191 Number of successful extensions: 19 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 19 length of database: 563,979 effective HSP length: 60 effective length of database: 422,859 effective search space used: 47783067 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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