Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F04f
         (521 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    27   0.50 
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   8.2  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   8.2  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   8.2  

>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 26.6 bits (56), Expect = 0.50
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 165 LEQDEN-ISVVFHPIFLEVPPCRWP 94
           +E+D N +  + + +FLE PP  WP
Sbjct: 373 MERDANKLQFIVNELFLERPPMEWP 397


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 264  LRFISQENSDSEMWLDFN 317
            LRF+ Q+NS + M+  +N
Sbjct: 1912 LRFVVQQNSSNVMYYTYN 1929


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 264  LRFISQENSDSEMWLDFN 317
            LRF+ Q+NS + M+  +N
Sbjct: 1913 LRFVVQQNSSNVMYYTYN 1930


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 354  LYDLYCGNDPQLPWTLTV 407
            L+DLYC N P  P   T+
Sbjct: 1548 LHDLYCLNRPFFPERYTI 1565


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 565,821
Number of Sequences: 2352
Number of extensions: 11191
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)