Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F04f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069596-1|AAL39741.1|  269|Drosophila melanogaster LD34980p pro...   189   2e-48
AE014298-1029|AAF46252.2|  269|Drosophila melanogaster CG1643-PA...   189   2e-48
AY119524-1|AAM50178.1|  454|Drosophila melanogaster GH15335p pro...    29   2.9  
AY058780-1|AAL14009.1|  727|Drosophila melanogaster SD07158p pro...    29   5.1  
AE013599-1353|AAF58611.2| 5303|Drosophila melanogaster CG13185-P...    29   5.1  
BT021261-1|AAX33409.1|  429|Drosophila melanogaster RE52861p pro...    28   6.7  
AB232987-1|BAE94193.1|  429|Drosophila melanogaster Rieske-domai...    28   6.7  

>AY069596-1|AAL39741.1|  269|Drosophila melanogaster LD34980p
           protein.
          Length = 269

 Score =  189 bits (460), Expect = 2e-48
 Identities = 81/142 (57%), Positives = 111/142 (78%)
 Frame = +3

Query: 93  MANDREVLREIWDGKLPICFHLAQEEIMEIQQPDPFYVMVPRLSYFPLVIDKMKRHFLRF 272
           MA+DREVLR IW+G++ ICF   ++EI+ I+ P+PFY+M+ RLSY PLV DK++++F R+
Sbjct: 1   MAHDREVLRMIWEGQIGICFQADRDEIVGIK-PEPFYLMISRLSYLPLVTDKVRKYFSRY 59

Query: 273 ISQENSDSEMWLDFNGQPLKWHYPIGFLYDLYCGNDPQLPWTLTVHFTKFPEDILLHCPN 452
           IS E+ D  +W DFNG PL+ HYPIG LYDL    +   PW LT+HF+KFPED+L+   +
Sbjct: 60  ISAEHQDGAVWFDFNGTPLRLHYPIGVLYDLLHPEEDSTPWCLTIHFSKFPEDMLVKLNS 119

Query: 453 KDVVEAHYMSTVKEADVLKHRG 518
           K+++E+HYMS +KEADVLKHRG
Sbjct: 120 KELLESHYMSCLKEADVLKHRG 141


>AE014298-1029|AAF46252.2|  269|Drosophila melanogaster CG1643-PA
           protein.
          Length = 269

 Score =  189 bits (460), Expect = 2e-48
 Identities = 81/142 (57%), Positives = 111/142 (78%)
 Frame = +3

Query: 93  MANDREVLREIWDGKLPICFHLAQEEIMEIQQPDPFYVMVPRLSYFPLVIDKMKRHFLRF 272
           MA+DREVLR IW+G++ ICF   ++EI+ I+ P+PFY+M+ RLSY PLV DK++++F R+
Sbjct: 1   MAHDREVLRMIWEGQIGICFQADRDEIVGIK-PEPFYLMISRLSYLPLVTDKVRKYFSRY 59

Query: 273 ISQENSDSEMWLDFNGQPLKWHYPIGFLYDLYCGNDPQLPWTLTVHFTKFPEDILLHCPN 452
           IS E+ D  +W DFNG PL+ HYPIG LYDL    +   PW LT+HF+KFPED+L+   +
Sbjct: 60  ISAEHQDGAVWFDFNGTPLRLHYPIGVLYDLLHPEEDSTPWCLTIHFSKFPEDMLVKLNS 119

Query: 453 KDVVEAHYMSTVKEADVLKHRG 518
           K+++E+HYMS +KEADVLKHRG
Sbjct: 120 KELLESHYMSCLKEADVLKHRG 141


>AY119524-1|AAM50178.1|  454|Drosophila melanogaster GH15335p
           protein.
          Length = 454

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 142 GSFPSHISRSTSLSLAILIVINMLITEHYYFLMLI 38
           GS+P    RS SL + + +  N+ + +H+Y L +I
Sbjct: 408 GSWPLDFRRSQSLPVIVSLHCNISLVQHFYALFII 442


>AY058780-1|AAL14009.1|  727|Drosophila melanogaster SD07158p
           protein.
          Length = 727

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 189 PDPFYVMVPRLSYFPLVIDKMKRHFLRFISQE 284
           P P+YV+V  L+  PLV+ +  R +   ++ E
Sbjct: 696 PFPYYVIVRDLNQLPLVLSEAMRQWFELVNSE 727


>AE013599-1353|AAF58611.2| 5303|Drosophila melanogaster CG13185-PA
            protein.
          Length = 5303

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 189  PDPFYVMVPRLSYFPLVIDKMKRHFLRFISQE 284
            P P+YV+V  L+  PLV+ +  R +   ++ E
Sbjct: 5272 PFPYYVIVRDLNQLPLVLSEAMRQWFELVNSE 5303


>BT021261-1|AAX33409.1|  429|Drosophila melanogaster RE52861p
           protein.
          Length = 429

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/55 (21%), Positives = 22/55 (40%)
 Frame = +3

Query: 348 GFLYDLYCGNDPQLPWTLTVHFTKFPEDILLHCPNKDVVEAHYMSTVKEADVLKH 512
           GF++  Y     +LPW L V   +  +  + H  N+  +  H     +    + H
Sbjct: 197 GFIFIWYHAEQTELPWDLPVPMGEIDDTFVYHGHNEFYINCHIQEIPENGADIAH 251


>AB232987-1|BAE94193.1|  429|Drosophila melanogaster Rieske-domain
           protein Neverland protein.
          Length = 429

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/55 (21%), Positives = 22/55 (40%)
 Frame = +3

Query: 348 GFLYDLYCGNDPQLPWTLTVHFTKFPEDILLHCPNKDVVEAHYMSTVKEADVLKH 512
           GF++  Y     +LPW L V   +  +  + H  N+  +  H     +    + H
Sbjct: 197 GFIFIWYHAEQTELPWDLPVPMGEIDDTFVYHGHNEFYINCHIQEIPENGADIAH 251


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,654,740
Number of Sequences: 53049
Number of extensions: 509337
Number of successful extensions: 1080
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)