Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-16|ABA00157.1|  163|Caenorhabditis elegans Atg (autopha...    83   1e-16
AC025726-15|ABA00156.1|  273|Caenorhabditis elegans Atg (autopha...    83   1e-16
U00047-12|AAA50685.1|  332|Caenorhabditis elegans Nuclear hormon...    29   2.7  
Z75554-4|CAA99957.2|  534|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z69791-3|CAA93662.1|  924|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z69791-2|CAA93661.2|  919|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z69791-1|CAA93660.1|  945|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z31590-8|CAA83465.1|  812|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF518559-1|AAM97343.1|  793|Caenorhabditis elegans inositol poly...    27   6.2  
Z78410-8|CAB01642.1|  556|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z78410-7|CAB01635.1|  652|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U04995-1|AAA56868.1|  652|Caenorhabditis elegans prohormone conv...    27   8.1  
AF067217-5|AAO38635.1|  856|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF067217-4|AAF99978.1|  887|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF000265-2|AAO38667.1|  887|Caenorhabditis elegans Paz/piwi doma...    27   8.1  
AF000265-1|AAB52946.2|  913|Caenorhabditis elegans Paz/piwi doma...    27   8.1  

>AC025726-16|ABA00157.1|  163|Caenorhabditis elegans Atg (autophagy)
           related protein5, isoform b protein.
          Length = 163

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
 Frame = +3

Query: 102 DREVLREIWDGKLPICFHLAQEEIMEIQQPDPFYVMVPRLSYFPLVIDKMKRHFLRFISQ 281
           D EV R++W+  +P  F L Q       +P PFY M+PR SY  L I K+   F R    
Sbjct: 2   DYEVCRKVWESHVPCQFTL-QSSGGTHGEPLPFYTMLPRFSYLALAIQKVLSSFNRRDDG 60

Query: 282 ENSDSE-MWLDFNGQPLKWHYPIGFLYDLYCGNDPQLPWTLTVHFTKFPEDILLHCPNKD 458
           E   S+ MWL+ NG PLK + PIG +YD    ++      + V  ++ P    +   ++D
Sbjct: 61  EKVHSDKMWLEHNGIPLKMYIPIGVIYDQANLSENDSILEIIVRTSQPPPQFQM--VDRD 118

Query: 459 VVEAHYMSTVKEADVLKHRGQ 521
           ++EA +M  +KEAD LK + +
Sbjct: 119 MMEAMFMQNIKEADYLKTKAE 139


>AC025726-15|ABA00156.1|  273|Caenorhabditis elegans Atg (autophagy)
           related protein5, isoform a protein.
          Length = 273

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
 Frame = +3

Query: 102 DREVLREIWDGKLPICFHLAQEEIMEIQQPDPFYVMVPRLSYFPLVIDKMKRHFLRFISQ 281
           D EV R++W+  +P  F L Q       +P PFY M+PR SY  L I K+   F R    
Sbjct: 2   DYEVCRKVWESHVPCQFTL-QSSGGTHGEPLPFYTMLPRFSYLALAIQKVLSSFNRRDDG 60

Query: 282 ENSDSE-MWLDFNGQPLKWHYPIGFLYDLYCGNDPQLPWTLTVHFTKFPEDILLHCPNKD 458
           E   S+ MWL+ NG PLK + PIG +YD    ++      + V  ++ P    +   ++D
Sbjct: 61  EKVHSDKMWLEHNGIPLKMYIPIGVIYDQANLSENDSILEIIVRTSQPPPQFQM--VDRD 118

Query: 459 VVEAHYMSTVKEADVLKHRGQ 521
           ++EA +M  +KEAD LK + +
Sbjct: 119 MMEAMFMQNIKEADYLKTKAE 139


>U00047-12|AAA50685.1|  332|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 9 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -3

Query: 477 YNVLLLHLCLGNEEECLQGTL*SVLSKSRVVEDH 376
           YN  LL LCL NE  C       +LS   VV  H
Sbjct: 269 YNDALLQLCLRNEGSCGPARFNDLLSVCHVVNKH 302


>Z75554-4|CAA99957.2|  534|Caenorhabditis elegans Hypothetical
           protein ZC455.6a protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 221 KSRHHNVKWIRLLNFHYFFLSKMKTYR*FSIPYFSKYLPVVGHFNSY 81
           K+RH    W ++LN   +  S    Y  F IP  +K +P+ G+   Y
Sbjct: 241 KARH----WKQILNDVTYHFSNSNPYLDFVIPTIAKVIPIGGYTMDY 283


>Z69791-3|CAA93662.1|  924|Caenorhabditis elegans Hypothetical
           protein F39D8.1c protein.
          Length = 924

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +2

Query: 32  VNNQHQEVIVFCDQHINNY*NGQRQGGT 115
           V NQ+Q    F DQ+ NNY  GQ QG T
Sbjct: 292 VGNQNQNPGQFQDQNQNNY-QGQYQGST 318


>Z69791-2|CAA93661.2|  919|Caenorhabditis elegans Hypothetical
           protein F39D8.1b protein.
          Length = 919

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +2

Query: 32  VNNQHQEVIVFCDQHINNY*NGQRQGGT 115
           V NQ+Q    F DQ+ NNY  GQ QG T
Sbjct: 287 VGNQNQNPGQFQDQNQNNY-QGQYQGST 313


>Z69791-1|CAA93660.1|  945|Caenorhabditis elegans Hypothetical
           protein F39D8.1a protein.
          Length = 945

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +2

Query: 32  VNNQHQEVIVFCDQHINNY*NGQRQGGT 115
           V NQ+Q    F DQ+ NNY  GQ QG T
Sbjct: 310 VGNQNQNPGQFQDQNQNNY-QGQYQGST 336


>Z31590-8|CAA83465.1|  812|Caenorhabditis elegans Hypothetical
           protein R01H10.7 protein.
          Length = 812

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 87  IKMANDREVLREIWDGKLPICFH-LAQEEIMEIQQPDPFYVMVPRLS 224
           ++++ + E LRE W  KL  C H +A+ E+ E+     FY M P  S
Sbjct: 115 LEISVESEELREQWMIKLATCSHQMARAELDELAY--KFYTMSPSAS 159


>AF518559-1|AAM97343.1|  793|Caenorhabditis elegans inositol
           polyphosphate-4-phosphataseprotein.
          Length = 793

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 87  IKMANDREVLREIWDGKLPICFH-LAQEEIMEIQQPDPFYVMVPRLS 224
           ++++ + E LRE W  KL  C H +A+ E+ E+     FY M P  S
Sbjct: 96  LEISVESEELREQWMIKLATCSHQMARAELDELAY--KFYTMSPSAS 140


>Z78410-8|CAB01642.1|  556|Caenorhabditis elegans Hypothetical
           protein C51E3.7b protein.
          Length = 556

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 107 GGTSRNMGWKTTDMFSSCSRRNNGNS 184
           GG +   G  TTD++  C+R ++G S
Sbjct: 269 GGRNPETGVATTDLYGRCTRSHSGTS 294


>Z78410-7|CAB01635.1|  652|Caenorhabditis elegans Hypothetical
           protein C51E3.7a protein.
          Length = 652

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 107 GGTSRNMGWKTTDMFSSCSRRNNGNS 184
           GG +   G  TTD++  C+R ++G S
Sbjct: 365 GGRNPETGVATTDLYGRCTRSHSGTS 390


>U04995-1|AAA56868.1|  652|Caenorhabditis elegans prohormone
           convertase 2 protein.
          Length = 652

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 107 GGTSRNMGWKTTDMFSSCSRRNNGNS 184
           GG +   G  TTD++  C+R ++G S
Sbjct: 365 GGRNPETGVATTDLYGRCTRSHSGTS 390


>AF067217-5|AAO38635.1|  856|Caenorhabditis elegans Hypothetical
           protein F56A6.1b protein.
          Length = 856

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 420 FPEDILLHCPNKDVVEAHYMSTVKEADVLK 509
           FP ++LL CPN+ V     ++  ++AD++K
Sbjct: 381 FPAEVLLLCPNQTVTNDQMINN-EQADMIK 409


>AF067217-4|AAF99978.1|  887|Caenorhabditis elegans Hypothetical
           protein F56A6.1a protein.
          Length = 887

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 420 FPEDILLHCPNKDVVEAHYMSTVKEADVLK 509
           FP ++LL CPN+ V     ++  ++AD++K
Sbjct: 381 FPAEVLLLCPNQTVTNDQMINN-EQADMIK 409


>AF000265-2|AAO38667.1|  887|Caenorhabditis elegans Paz/piwi
           domain-containing protein1, isoform c protein.
          Length = 887

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 420 FPEDILLHCPNKDVVEAHYMSTVKEADVLK 509
           FP ++LL CPN+ V     ++  ++AD++K
Sbjct: 381 FPAEVLLLCPNQTVTNDQMINN-EQADMIK 409


>AF000265-1|AAB52946.2|  913|Caenorhabditis elegans Paz/piwi
           domain-containing protein1, isoform a protein.
          Length = 913

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 420 FPEDILLHCPNKDVVEAHYMSTVKEADVLK 509
           FP ++LL CPN+ V     ++  ++AD++K
Sbjct: 407 FPAEVLLLCPNQTVTNDQMINN-EQADMIK 435


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,453,347
Number of Sequences: 27780
Number of extensions: 274759
Number of successful extensions: 655
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)