BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308F03f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom... 96 2e-21 SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.2 SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 3.0 SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 26 3.9 SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha... 25 6.8 SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 25 6.8 SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 25 6.8 SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 9.0 SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 9.0 >SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 166 Score = 96.3 bits (229), Expect = 2e-21 Identities = 44/92 (47%), Positives = 64/92 (69%), Gaps = 1/92 (1%) Frame = +3 Query: 198 VEKHLELEFDLGSLLASDTNDLDIKTLK-TNKDSYLLALTRDNAQLLLNKVWELPTERIE 374 +E + L+FDLG++ A D + LD L + K+S+L +L+RDN Q L+NK+ LP ER Sbjct: 5 IENSIPLDFDLGNMAAFDISPLDETKLSGSEKESFLFSLSRDNVQQLVNKMISLPKERTS 64 Query: 375 EAIVVRLPQPTTILPRAKPVPVPKPLTKWQEF 470 + ++++LP+ T LPRAKP+P PKP TKWQ F Sbjct: 65 DGVLLQLPETVTPLPRAKPLPKPKPETKWQRF 96 >SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 319 Score = 26.6 bits (56), Expect = 2.2 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 363 ERIEEAIVVRLPQPTTILPRAKPVPVPK 446 ER++E IV+ +P LP A P+P+ K Sbjct: 72 ERLKEWIVLAKVRPEIPLPPAAPIPMKK 99 >SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 882 Score = 26.2 bits (55), Expect = 3.0 Identities = 16/62 (25%), Positives = 29/62 (46%) Frame = -3 Query: 297 MNLCLSSAFLCPNRLCQRPIVNLGRILIPNVFRPLLVYIYLLSFVPFLISHLQYPLLSEH 118 +N CL +CP R + +L LI + F P V + + + L+ P+LS++ Sbjct: 456 LNRCLQLTDVCPPRASLETLCSLCVTLINDTFEP--VRMATTNVLATLVQIFSQPVLSKY 513 Query: 117 FL 112 + Sbjct: 514 IV 515 >SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual Length = 963 Score = 25.8 bits (54), Expect = 3.9 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -3 Query: 288 CLSSAFLCPNRLCQRPIVNLGRILIPNVFRPLL 190 CLS+ +LC LCQ+ R L P + LL Sbjct: 469 CLSAFYLCMPSLCQKSYGTERRYLCPPIVLYLL 501 >SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase Arg5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 415 Score = 25.0 bits (52), Expect = 6.8 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = -2 Query: 409 VVGCGNRTTMASSILSVGSSHTLFSSS*ALSRVNASKYESL 287 V+ CG + + S++S G+S T+F + V AS Y+ + Sbjct: 228 VIDCGVKENILRSLVSRGASVTVFPFDYPIQNV-ASNYDGI 267 >SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 727 Score = 25.0 bits (52), Expect = 6.8 Identities = 8/22 (36%), Positives = 16/22 (72%) Frame = +3 Query: 144 NEILEREQKKADKYKPITVEKH 209 +E +++E+ D+Y P+T E+H Sbjct: 214 DETVKKEENDKDQYPPMTKEQH 235 >SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizosaccharomyces pombe|chr 1|||Manual Length = 758 Score = 25.0 bits (52), Expect = 6.8 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = -3 Query: 282 SSAFLCPNRLCQRPIVNLGRILIPNVFRPLLVYIYLLSFVPFLISHL 142 SS++ L I+ IL +FR L Y LL+F PF++ ++ Sbjct: 396 SSSYSLDRMLVAISILGACSILSLILFRNLYNYKELLAFAPFVVQNI 442 >SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosaccharomyces pombe|chr 2|||Manual Length = 948 Score = 24.6 bits (51), Expect = 9.0 Identities = 15/29 (51%), Positives = 21/29 (72%) Frame = -2 Query: 388 TTMASSILSVGSSHTLFSSS*ALSRVNAS 302 T ++SSI+S GSS L SSS +S +N+S Sbjct: 573 THISSSIVSSGSSSAL-SSSTIVSSINSS 600 >SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1461 Score = 24.6 bits (51), Expect = 9.0 Identities = 8/18 (44%), Positives = 10/18 (55%) Frame = +3 Query: 396 PQPTTILPRAKPVPVPKP 449 P P I+P P P+P P Sbjct: 735 PPPAVIVPTPAPAPIPVP 752 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,046,233 Number of Sequences: 5004 Number of extensions: 42216 Number of successful extensions: 144 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 140 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 143 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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