Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1646 - 35027475-35027600,35027713-35027826,35027920-350281...    53   2e-07
04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605...    29   1.7  
03_05_0013 - 19718178-19718930,19718997-19719205,19719245-197193...    29   2.3  
04_01_0260 - 3506672-3508981                                           28   4.0  
01_06_0295 + 28276505-28276576,28276682-28276888,28277492-282777...    27   6.9  
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561...    27   9.1  
03_02_0308 - 7297228-7298008,7298495-7298576,7298612-7298669,729...    27   9.1  

>04_04_1646 -
           35027475-35027600,35027713-35027826,35027920-35028106,
           35028262-35028379,35028699-35028827,35028947-35028998,
           35029525-35029869
          Length = 356

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 24/66 (36%), Positives = 35/66 (53%)
 Frame = +3

Query: 324 AQLLLNKVWELPTERIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQEFXXXXXXXXXXX 503
           AQ + + ++ LP     +  +VRLP PTT  PR K +P PKP TKW++F           
Sbjct: 80  AQAVADALFALPATEDRDGPMVRLPPPTTRFPREKHLPRPKPPTKWEQFAKMKGITKHKK 139

Query: 504 DXLQWD 521
           +  +WD
Sbjct: 140 NKREWD 145


>04_04_1400 -
           33259716-33260069,33260172-33260219,33260471-33260596,
           33260850-33260900,33260963-33261055,33261217-33261272,
           33261465-33261522,33262306-33262365,33262513-33262623,
           33263368-33263949,33264026-33264097
          Length = 536

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +3

Query: 132 MDIVNEILEREQKKADKYKPITVEK-HLELEFDLGSLLASDTNDLDIKTLKTNKDSYLLA 308
           M+ +  + + E   A+  K +  E+ +L+L+ D    +A    ++D+KTL  +K    +A
Sbjct: 245 MEALARLAKLEVTNAELAKSLAREQWNLDLQVDQ---VAQLREEVDMKTLTQDKYKRKIA 301

Query: 309 LTRDNAQLLLNKVWELPTERIEEAIV 386
             +  + LL+N++  L   ++EE ++
Sbjct: 302 KMQKTSPLLVNEIESLRRFKLEEEMI 327


>03_05_0013 -
           19718178-19718930,19718997-19719205,19719245-19719325,
           19719581-19720613
          Length = 691

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 327 QLLLNKVWELPTERIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQE 467
           Q  L K   +PT R  + I+V+L      L ++KP   PKP   W+E
Sbjct: 628 QNFLEKETTMPTNRYWK-ILVKLSTLAKKLEQSKPSSTPKPKKVWKE 673


>04_01_0260 - 3506672-3508981
          Length = 769

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
 Frame = +3

Query: 303 LALTRDNAQLLLNKVWELPTERIEEAIVVRLPQPTTILPRAK-------PVPVPKPLTKW 461
           + ++RD    L ++VW+       E I V  P P    P A        P P PKP+T +
Sbjct: 431 IQISRDFRNKLFDRVWKNMELAFPERIPVEYPLPPHPYPMAPMEFDLSLPAPPPKPITGF 490

Query: 462 QE 467
            +
Sbjct: 491 DQ 492


>01_06_0295 +
           28276505-28276576,28276682-28276888,28277492-28277740,
           28277928-28278080,28278158-28278313,28278411-28278570,
           28278664-28278815,28278906-28278993,28279111-28279223,
           28279271-28279345,28279435-28279669,28279760-28280148
          Length = 682

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 138 IVNEILEREQKKADKYKPITVEKHLELE 221
           + +E+L  EQ KA K K + ++K  ELE
Sbjct: 280 VESEVLRLEQLKASKMKDLVLKKKAELE 307


>12_02_1286 -
           27555143-27555191,27555290-27555511,27555911-27556162,
           27556683-27557062,27557202-27557311,27557864-27558033,
           27558236-27558444,27558528-27558617,27559125-27559264,
           27559356-27559463,27559626-27559716,27560736-27560852,
           27561497-27561767,27561892-27562193,27562400-27562469,
           27563464-27563702,27564613-27564846,27564943-27565179,
           27565276-27565734
          Length = 1249

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 117 SVLITMDIVNEILEREQKKADKYKPITVEKHLELEFDL 230
           S LI  +    ++ER+QKKA K +    E HL L+ DL
Sbjct: 198 SALIYQEKRTIVMERKQKKAQKEE---AENHLRLQQDL 232


>03_02_0308 -
           7297228-7298008,7298495-7298576,7298612-7298669,
           7298723-7298835,7298924-7299034,7299480-7299597,
           7299706-7299809,7300570-7300665,7301806-7302307
          Length = 654

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 357 PTERIEEAIVVRLPQPTTILPRAKPVPVPKPLTKW 461
           P++ ++   V   P     +P   PVP+P   T W
Sbjct: 491 PSDGMQPLFVAPAPVAAAAMPFPSPVPLPNSTTAW 525


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,269,916
Number of Sequences: 37544
Number of extensions: 250668
Number of successful extensions: 791
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)