Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F03f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39751| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.58 
SB_16411| Best HMM Match : DUF791 (HMM E-Value=0)                      30   1.3  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_50910| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_11327| Best HMM Match : Upf2 (HMM E-Value=5.9)                      28   4.1  
SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            27   9.4  
SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65)                    27   9.4  

>SB_39751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +3

Query: 111 KGSVLITMDIVNEILEREQKKADKYKPITVEKHLELEFDLGSLLASDTND--LDIKTLKT 284
           K S   + +I N+   +   K++    I +  +  +  D+ SL  +  N+    IKT   
Sbjct: 40  KNSEKSSNNINNDFNYKNINKSNNINNIIINNNNYINHDINSLSTTTINNKITSIKTTSL 99

Query: 285 NKDSYLLALTRDNAQLLLNKVWELPTE 365
           +  S  +  T   A +L N+V+++P++
Sbjct: 100 STSSTTITSTAAAATVLANRVYDIPSQ 126


>SB_16411| Best HMM Match : DUF791 (HMM E-Value=0)
          Length = 445

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -3

Query: 282 SSAFLCPNRLCQRPIVNLGRILIPNVFRPLL---VYIYLLSFVPFLISHLQYPLL 127
           SS  + P   C R I+   RI++  +   L    +YI++  + P L  H QYP L
Sbjct: 227 SSKLVGPCMDCLRHIIQNRRIMLIGIINSLFESAMYIFVFLWTPVLDRHQQYPPL 281


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 114  GSVLITMDIVNEILEREQKKADKYKPI-TVEKHLELEFDLGSLLASDTNDLDIKTLKTNK 290
            G +  ++   +E +   +KKADK  P+ T  + +E + D    L  +  D+D      N 
Sbjct: 4065 GKLQESLKNTDEAISTVEKKADKLSPVGTDVETIEQQMDDLKELQKEVEDIDELIADLND 4124

Query: 291  DSYLLALTRDNA 326
              Y +AL    A
Sbjct: 4125 QKYRVALQNPTA 4136


>SB_50910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 141 VNEILEREQKKADKYKPITVEKHLELE 221
           ++E LE + K+ D+ K + +EK LELE
Sbjct: 5   LSEQLEMQSKEIDELKNVIIEKDLELE 31


>SB_11327| Best HMM Match : Upf2 (HMM E-Value=5.9)
          Length = 564

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 273 FLCPNRLCQRPIVNLGRILIPNVF-RPLLVYIYLLSF 166
           +LC  R CQ  I ++G+ L+  VF +   VY+Y + F
Sbjct: 517 WLCSPRTCQLFIDSIGKQLLSGVFEKSNTVYVYCVDF 553


>SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -3

Query: 279 SAFLCPNRLCQRPIVNLGRILIPNVFRPLLVYIYL--LSFVPFLISHLQYPLLSEHF 115
           S F CP      P     RI  P    P  V+I L  +SF+P+ +S   YP+   H+
Sbjct: 51  SRFPCPLSRIPCPF---SRIPCPFSRTPYTVFIILCPVSFIPYTMSLFPYPVYRVHY 104


>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 210 NVFRPLLVYIYLLSFVPFL-ISHLQYP 133
           +VF P   ++YLL  VPF  IS L++P
Sbjct: 830 SVFNPCFFFLYLLLNVPFKNISELRHP 856


>SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65)
          Length = 1007

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 406 VGCGNRTTMASSILSVGSSHTLFSSS*ALSRVNASK 299
           V  G+RT+  SS+ SV SSH  +  S   +++N SK
Sbjct: 471 VSAGSRTSSLSSLSSVTSSHPEYKGS---TKLNTSK 503


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,594,618
Number of Sequences: 59808
Number of extensions: 293432
Number of successful extensions: 830
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)