BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308F03f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_39751| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58 SB_16411| Best HMM Match : DUF791 (HMM E-Value=0) 30 1.3 SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3 SB_50910| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1 SB_11327| Best HMM Match : Upf2 (HMM E-Value=5.9) 28 4.1 SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045) 27 9.4 SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65) 27 9.4 >SB_39751| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 128 Score = 31.1 bits (67), Expect = 0.58 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Frame = +3 Query: 111 KGSVLITMDIVNEILEREQKKADKYKPITVEKHLELEFDLGSLLASDTND--LDIKTLKT 284 K S + +I N+ + K++ I + + + D+ SL + N+ IKT Sbjct: 40 KNSEKSSNNINNDFNYKNINKSNNINNIIINNNNYINHDINSLSTTTINNKITSIKTTSL 99 Query: 285 NKDSYLLALTRDNAQLLLNKVWELPTE 365 + S + T A +L N+V+++P++ Sbjct: 100 STSSTTITSTAAAATVLANRVYDIPSQ 126 >SB_16411| Best HMM Match : DUF791 (HMM E-Value=0) Length = 445 Score = 29.9 bits (64), Expect = 1.3 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Frame = -3 Query: 282 SSAFLCPNRLCQRPIVNLGRILIPNVFRPLL---VYIYLLSFVPFLISHLQYPLL 127 SS + P C R I+ RI++ + L +YI++ + P L H QYP L Sbjct: 227 SSKLVGPCMDCLRHIIQNRRIMLIGIINSLFESAMYIFVFLWTPVLDRHQQYPPL 281 >SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 6406 Score = 29.1 bits (62), Expect = 2.3 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Frame = +3 Query: 114 GSVLITMDIVNEILEREQKKADKYKPI-TVEKHLELEFDLGSLLASDTNDLDIKTLKTNK 290 G + ++ +E + +KKADK P+ T + +E + D L + D+D N Sbjct: 4065 GKLQESLKNTDEAISTVEKKADKLSPVGTDVETIEQQMDDLKELQKEVEDIDELIADLND 4124 Query: 291 DSYLLALTRDNA 326 Y +AL A Sbjct: 4125 QKYRVALQNPTA 4136 >SB_50910| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 64 Score = 28.3 bits (60), Expect = 4.1 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +3 Query: 141 VNEILEREQKKADKYKPITVEKHLELE 221 ++E LE + K+ D+ K + +EK LELE Sbjct: 5 LSEQLEMQSKEIDELKNVIIEKDLELE 31 >SB_11327| Best HMM Match : Upf2 (HMM E-Value=5.9) Length = 564 Score = 28.3 bits (60), Expect = 4.1 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = -3 Query: 273 FLCPNRLCQRPIVNLGRILIPNVF-RPLLVYIYLLSF 166 +LC R CQ I ++G+ L+ VF + VY+Y + F Sbjct: 517 WLCSPRTCQLFIDSIGKQLLSGVFEKSNTVYVYCVDF 553 >SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 249 Score = 27.5 bits (58), Expect = 7.1 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Frame = -3 Query: 279 SAFLCPNRLCQRPIVNLGRILIPNVFRPLLVYIYL--LSFVPFLISHLQYPLLSEHF 115 S F CP P RI P P V+I L +SF+P+ +S YP+ H+ Sbjct: 51 SRFPCPLSRIPCPF---SRIPCPFSRTPYTVFIILCPVSFIPYTMSLFPYPVYRVHY 104 >SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045) Length = 1050 Score = 27.1 bits (57), Expect = 9.4 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = -3 Query: 210 NVFRPLLVYIYLLSFVPFL-ISHLQYP 133 +VF P ++YLL VPF IS L++P Sbjct: 830 SVFNPCFFFLYLLLNVPFKNISELRHP 856 >SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65) Length = 1007 Score = 27.1 bits (57), Expect = 9.4 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = -2 Query: 406 VGCGNRTTMASSILSVGSSHTLFSSS*ALSRVNASK 299 V G+RT+ SS+ SV SSH + S +++N SK Sbjct: 471 VSAGSRTSSLSSLSSVTSSHPEYKGS---TKLNTSK 503 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,594,618 Number of Sequences: 59808 Number of extensions: 293432 Number of successful extensions: 830 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 758 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 826 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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