BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308F03f (521 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81035-7|CAB02731.1| 333|Caenorhabditis elegans Hypothetical pr... 67 6e-12 AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical... 30 1.2 AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical... 30 1.2 AC024766-1|AAF59490.2| 160|Caenorhabditis elegans Hypothetical ... 29 1.5 Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical pr... 29 2.0 AF077542-5|AAC26299.1| 883|Caenorhabditis elegans Hypothetical ... 29 2.0 Z81544-2|CAB04434.1| 342|Caenorhabditis elegans Hypothetical pr... 29 2.7 AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 29 2.7 Z93374-4|CAB07556.1| 834|Caenorhabditis elegans Hypothetical pr... 28 4.7 Z81102-1|CAB03202.1| 320|Caenorhabditis elegans Hypothetical pr... 27 6.2 Z36752-5|CAA85328.2| 533|Caenorhabditis elegans Hypothetical pr... 27 6.2 AL031627-8|CAA20960.2| 222|Caenorhabditis elegans Hypothetical ... 27 8.1 AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 27 8.1 AC024878-3|AAK85511.3| 185|Caenorhabditis elegans Hypothetical ... 27 8.1 U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 23 9.3 >Z81035-7|CAB02731.1| 333|Caenorhabditis elegans Hypothetical protein C15H11.9 protein. Length = 333 Score = 67.3 bits (157), Expect = 6e-12 Identities = 37/95 (38%), Positives = 54/95 (56%) Frame = +3 Query: 186 KPITVEKHLELEFDLGSLLASDTNDLDIKTLKTNKDSYLLALTRDNAQLLLNKVWELPTE 365 K VEK ++ DLG+LL +D + ++ + L R N QLL N +W+L + Sbjct: 4 KSTEVEKAIDPIIDLGNLLF-----IDREPIQGDASEGLEERARKNTQLLFNNIWQLEQK 58 Query: 366 RIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQEF 470 R+EEAI+V LP T LPR K +P K TKW+++ Sbjct: 59 RVEEAIIVTLPPATYRLPREKRLPEKKEPTKWEKY 93 >AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical protein Y39G10AR.18b protein. Length = 586 Score = 29.9 bits (64), Expect = 1.2 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 6/74 (8%) Frame = +3 Query: 261 LDIKT---LKTNKDSYLLALTRDNAQLLLNKVWELPTERIEEAI---VVRLPQPTTILPR 422 LD KT L T +++ + Q +N V PTE A + LP P I P Sbjct: 219 LDAKTMNALHTIREAATTSAQAAAIQDAINSVLSQPTEASPSAFGPPLAHLPAPVAIYPT 278 Query: 423 AKPVPVPKPLTKWQ 464 P P P P Q Sbjct: 279 PPPPPAPAPAAPQQ 292 >AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical protein Y39G10AR.18a protein. Length = 946 Score = 29.9 bits (64), Expect = 1.2 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 6/74 (8%) Frame = +3 Query: 261 LDIKT---LKTNKDSYLLALTRDNAQLLLNKVWELPTERIEEAI---VVRLPQPTTILPR 422 LD KT L T +++ + Q +N V PTE A + LP P I P Sbjct: 579 LDAKTMNALHTIREAATTSAQAAAIQDAINSVLSQPTEASPSAFGPPLAHLPAPVAIYPT 638 Query: 423 AKPVPVPKPLTKWQ 464 P P P P Q Sbjct: 639 PPPPPAPAPAAPQQ 652 >AC024766-1|AAF59490.2| 160|Caenorhabditis elegans Hypothetical protein Y39G10AL.1 protein. Length = 160 Score = 29.5 bits (63), Expect = 1.5 Identities = 11/19 (57%), Positives = 16/19 (84%) Frame = +3 Query: 132 MDIVNEILEREQKKADKYK 188 MDIVN+++ REQKK +Y+ Sbjct: 106 MDIVNDLMAREQKKRQEYQ 124 >Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical protein C05G5.2 protein. Length = 685 Score = 29.1 bits (62), Expect = 2.0 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 1/95 (1%) Frame = +3 Query: 168 KKADKYKPITVEKHLELEFDLGSLLASDTNDLDIKTLKTNKDSYLLALTRDNAQLLLNKV 347 KK+ KP+ V+K +E TN + K L + D+ L Sbjct: 437 KKSVPPKPVEVKK-VETPKPSQPPQVKPTNHTAVPATKPVAKKSLFSSDSDSDDDFLKSF 495 Query: 348 WEL-PTERIEEAIVVRLPQPTTILPRAKPVPVPKP 449 + P + E VV+ P ++P+A +P PKP Sbjct: 496 SKSKPVAKTESIPVVKKPIEPVVVPKAVDIPAPKP 530 >AF077542-5|AAC26299.1| 883|Caenorhabditis elegans Hypothetical protein Y57G7A.6 protein. Length = 883 Score = 29.1 bits (62), Expect = 2.0 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 8/49 (16%) Frame = +3 Query: 162 EQKKADK-YKPITVEKHL-------ELEFDLGSLLASDTNDLDIKTLKT 284 E KK D +KP+T E H EL+ LG+LL + + + TLKT Sbjct: 332 EMKKLDDLWKPVTTESHFYTMRQVTELQQHLGNLLPQNGIETSLTTLKT 380 >Z81544-2|CAB04434.1| 342|Caenorhabditis elegans Hypothetical protein F49C5.6 protein. Length = 342 Score = 28.7 bits (61), Expect = 2.7 Identities = 14/58 (24%), Positives = 29/58 (50%) Frame = -3 Query: 315 GSMQVNMNLCLSSAFLCPNRLCQRPIVNLGRILIPNVFRPLLVYIYLLSFVPFLISHL 142 G++ ++ + L+ LC RL + + + N+ R L + + + VPFL+ H+ Sbjct: 201 GTIVSSIIIVLTFGILCYRRLNAIVVTTMNSANLKNLQRQLFYALVIQTLVPFLLMHI 258 >AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical protein Y40C5A.3 protein. Length = 2344 Score = 28.7 bits (61), Expect = 2.7 Identities = 17/35 (48%), Positives = 23/35 (65%) Frame = -2 Query: 391 RTTMASSILSVGSSHTLFSSS*ALSRVNASKYESL 287 RT +S+ LS GSS SSS A +V++SK ES+ Sbjct: 1065 RTHQSSNSLSTGSSLPTSSSSSAPVKVSSSKIESM 1099 >Z93374-4|CAB07556.1| 834|Caenorhabditis elegans Hypothetical protein C06C6.6 protein. Length = 834 Score = 27.9 bits (59), Expect = 4.7 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 8/49 (16%) Frame = +3 Query: 162 EQKKA-DKYKPITVEKH-------LELEFDLGSLLASDTNDLDIKTLKT 284 E KK D +KP+T+E H +EL+ LG+L++S + LKT Sbjct: 366 EMKKLNDLWKPVTIENHYHVMRQVIELQQHLGNLMSSTIIGQTLSILKT 414 >Z81102-1|CAB03202.1| 320|Caenorhabditis elegans Hypothetical protein M02B1.3 protein. Length = 320 Score = 27.5 bits (58), Expect = 6.2 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -2 Query: 220 SNSKCFSTVIGLYLSAFFCSLSNISF 143 + S ST+ GLYL AFFC + + F Sbjct: 93 TTSLIHSTISGLYLFAFFCYNTKLMF 118 >Z36752-5|CAA85328.2| 533|Caenorhabditis elegans Hypothetical protein F35H8.6 protein. Length = 533 Score = 27.5 bits (58), Expect = 6.2 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -2 Query: 196 VIGLYLSAFFCSLSNISFTISIVIRTL 116 VI + FC+LS I +TI V RT+ Sbjct: 486 VIAFFFFVIFCTLSIIYYTIRTVFRTI 512 >AL031627-8|CAA20960.2| 222|Caenorhabditis elegans Hypothetical protein Y102A5C.17 protein. Length = 222 Score = 27.1 bits (57), Expect = 8.1 Identities = 11/39 (28%), Positives = 18/39 (46%) Frame = +3 Query: 354 LPTERIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQEF 470 +PT+++E TT P+P P T W++F Sbjct: 42 IPTQQVETTTTTTTTTTTTTTSTTTTTPIPCP-TDWEQF 79 >AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical protein F59E12.9 protein. Length = 1621 Score = 27.1 bits (57), Expect = 8.1 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +3 Query: 396 PQPTTILPRAKPVPVPKPLT 455 P + I+P A PVPVP P T Sbjct: 1105 PMASHIVPVAAPVPVPTPFT 1124 >AC024878-3|AAK85511.3| 185|Caenorhabditis elegans Hypothetical protein Y97E10AL.1 protein. Length = 185 Score = 27.1 bits (57), Expect = 8.1 Identities = 17/58 (29%), Positives = 32/58 (55%) Frame = -3 Query: 291 LCLSSAFLCPNRLCQRPIVNLGRILIPNVFRPLLVYIYLLSFVPFLISHLQYPLLSEH 118 LCL S P R + ++++ +L + + Y+YLL++VPFL + ++Y + H Sbjct: 127 LCLRSGKNGPGRFAE--LIDIFSLLENQ--QMIQKYMYLLNYVPFLSASVKYNIQLLH 180 >U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical protein T26C11.2 protein. Length = 343 Score = 23.4 bits (48), Expect(2) = 9.3 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +3 Query: 396 PQPTTILPRAKPVPVPKPL 452 P+P +P+ KP P PKP+ Sbjct: 46 PKPKP-MPKHKPKPFPKPM 63 Score = 21.8 bits (44), Expect(2) = 9.3 Identities = 7/11 (63%), Positives = 9/11 (81%) Frame = +3 Query: 426 KPVPVPKPLTK 458 KP+P PKP+ K Sbjct: 85 KPMPFPKPMPK 95 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,121,044 Number of Sequences: 27780 Number of extensions: 233091 Number of successful extensions: 918 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 809 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 911 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1017709248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -