Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81035-7|CAB02731.1|  333|Caenorhabditis elegans Hypothetical pr...    67   6e-12
AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical...    30   1.2  
AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical...    30   1.2  
AC024766-1|AAF59490.2|  160|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF077542-5|AAC26299.1|  883|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z81544-2|CAB04434.1|  342|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z93374-4|CAB07556.1|  834|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z36752-5|CAA85328.2|  533|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL031627-8|CAA20960.2|  222|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    27   8.1  
AC024878-3|AAK85511.3|  185|Caenorhabditis elegans Hypothetical ...    27   8.1  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    23   9.3  

>Z81035-7|CAB02731.1|  333|Caenorhabditis elegans Hypothetical
           protein C15H11.9 protein.
          Length = 333

 Score = 67.3 bits (157), Expect = 6e-12
 Identities = 37/95 (38%), Positives = 54/95 (56%)
 Frame = +3

Query: 186 KPITVEKHLELEFDLGSLLASDTNDLDIKTLKTNKDSYLLALTRDNAQLLLNKVWELPTE 365
           K   VEK ++   DLG+LL      +D + ++ +    L    R N QLL N +W+L  +
Sbjct: 4   KSTEVEKAIDPIIDLGNLLF-----IDREPIQGDASEGLEERARKNTQLLFNNIWQLEQK 58

Query: 366 RIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQEF 470
           R+EEAI+V LP  T  LPR K +P  K  TKW+++
Sbjct: 59  RVEEAIIVTLPPATYRLPREKRLPEKKEPTKWEKY 93


>AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18b protein.
          Length = 586

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
 Frame = +3

Query: 261 LDIKT---LKTNKDSYLLALTRDNAQLLLNKVWELPTERIEEAI---VVRLPQPTTILPR 422
           LD KT   L T +++   +      Q  +N V   PTE    A    +  LP P  I P 
Sbjct: 219 LDAKTMNALHTIREAATTSAQAAAIQDAINSVLSQPTEASPSAFGPPLAHLPAPVAIYPT 278

Query: 423 AKPVPVPKPLTKWQ 464
             P P P P    Q
Sbjct: 279 PPPPPAPAPAAPQQ 292


>AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18a protein.
          Length = 946

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
 Frame = +3

Query: 261 LDIKT---LKTNKDSYLLALTRDNAQLLLNKVWELPTERIEEAI---VVRLPQPTTILPR 422
           LD KT   L T +++   +      Q  +N V   PTE    A    +  LP P  I P 
Sbjct: 579 LDAKTMNALHTIREAATTSAQAAAIQDAINSVLSQPTEASPSAFGPPLAHLPAPVAIYPT 638

Query: 423 AKPVPVPKPLTKWQ 464
             P P P P    Q
Sbjct: 639 PPPPPAPAPAAPQQ 652


>AC024766-1|AAF59490.2|  160|Caenorhabditis elegans Hypothetical
           protein Y39G10AL.1 protein.
          Length = 160

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 132 MDIVNEILEREQKKADKYK 188
           MDIVN+++ REQKK  +Y+
Sbjct: 106 MDIVNDLMAREQKKRQEYQ 124


>Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical
           protein C05G5.2 protein.
          Length = 685

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
 Frame = +3

Query: 168 KKADKYKPITVEKHLELEFDLGSLLASDTNDLDIKTLKTNKDSYLLALTRDNAQLLLNKV 347
           KK+   KP+ V+K +E            TN   +   K      L +   D+    L   
Sbjct: 437 KKSVPPKPVEVKK-VETPKPSQPPQVKPTNHTAVPATKPVAKKSLFSSDSDSDDDFLKSF 495

Query: 348 WEL-PTERIEEAIVVRLPQPTTILPRAKPVPVPKP 449
            +  P  + E   VV+ P    ++P+A  +P PKP
Sbjct: 496 SKSKPVAKTESIPVVKKPIEPVVVPKAVDIPAPKP 530


>AF077542-5|AAC26299.1|  883|Caenorhabditis elegans Hypothetical
           protein Y57G7A.6 protein.
          Length = 883

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
 Frame = +3

Query: 162 EQKKADK-YKPITVEKHL-------ELEFDLGSLLASDTNDLDIKTLKT 284
           E KK D  +KP+T E H        EL+  LG+LL  +  +  + TLKT
Sbjct: 332 EMKKLDDLWKPVTTESHFYTMRQVTELQQHLGNLLPQNGIETSLTTLKT 380


>Z81544-2|CAB04434.1|  342|Caenorhabditis elegans Hypothetical
           protein F49C5.6 protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = -3

Query: 315 GSMQVNMNLCLSSAFLCPNRLCQRPIVNLGRILIPNVFRPLLVYIYLLSFVPFLISHL 142
           G++  ++ + L+   LC  RL    +  +    + N+ R L   + + + VPFL+ H+
Sbjct: 201 GTIVSSIIIVLTFGILCYRRLNAIVVTTMNSANLKNLQRQLFYALVIQTLVPFLLMHI 258


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = -2

Query: 391  RTTMASSILSVGSSHTLFSSS*ALSRVNASKYESL 287
            RT  +S+ LS GSS    SSS A  +V++SK ES+
Sbjct: 1065 RTHQSSNSLSTGSSLPTSSSSSAPVKVSSSKIESM 1099


>Z93374-4|CAB07556.1|  834|Caenorhabditis elegans Hypothetical
           protein C06C6.6 protein.
          Length = 834

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
 Frame = +3

Query: 162 EQKKA-DKYKPITVEKH-------LELEFDLGSLLASDTNDLDIKTLKT 284
           E KK  D +KP+T+E H       +EL+  LG+L++S      +  LKT
Sbjct: 366 EMKKLNDLWKPVTIENHYHVMRQVIELQQHLGNLMSSTIIGQTLSILKT 414


>Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical
           protein M02B1.3 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 220 SNSKCFSTVIGLYLSAFFCSLSNISF 143
           + S   ST+ GLYL AFFC  + + F
Sbjct: 93  TTSLIHSTISGLYLFAFFCYNTKLMF 118


>Z36752-5|CAA85328.2|  533|Caenorhabditis elegans Hypothetical
           protein F35H8.6 protein.
          Length = 533

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 196 VIGLYLSAFFCSLSNISFTISIVIRTL 116
           VI  +    FC+LS I +TI  V RT+
Sbjct: 486 VIAFFFFVIFCTLSIIYYTIRTVFRTI 512


>AL031627-8|CAA20960.2|  222|Caenorhabditis elegans Hypothetical
           protein Y102A5C.17 protein.
          Length = 222

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +3

Query: 354 LPTERIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQEF 470
           +PT+++E          TT        P+P P T W++F
Sbjct: 42  IPTQQVETTTTTTTTTTTTTTSTTTTTPIPCP-TDWEQF 79


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 396  PQPTTILPRAKPVPVPKPLT 455
            P  + I+P A PVPVP P T
Sbjct: 1105 PMASHIVPVAAPVPVPTPFT 1124


>AC024878-3|AAK85511.3|  185|Caenorhabditis elegans Hypothetical
           protein Y97E10AL.1 protein.
          Length = 185

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = -3

Query: 291 LCLSSAFLCPNRLCQRPIVNLGRILIPNVFRPLLVYIYLLSFVPFLISHLQYPLLSEH 118
           LCL S    P R  +  ++++  +L     + +  Y+YLL++VPFL + ++Y +   H
Sbjct: 127 LCLRSGKNGPGRFAE--LIDIFSLLENQ--QMIQKYMYLLNYVPFLSASVKYNIQLLH 180


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 23.4 bits (48), Expect(2) = 9.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 396 PQPTTILPRAKPVPVPKPL 452
           P+P   +P+ KP P PKP+
Sbjct: 46  PKPKP-MPKHKPKPFPKPM 63



 Score = 21.8 bits (44), Expect(2) = 9.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 426 KPVPVPKPLTK 458
           KP+P PKP+ K
Sbjct: 85  KPMPFPKPMPK 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,121,044
Number of Sequences: 27780
Number of extensions: 233091
Number of successful extensions: 918
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)