Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F03f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37990.1 68415.m04663 ribosome biogenesis regulatory protein ...    60   7e-10
At2g17440.1 68415.m02012 leucine-rich repeat family protein cont...    29   1.9  
At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger) fa...    28   3.3  
At5g53400.1 68418.m06635 nuclear movement family protein contain...    27   5.8  
At2g15240.1 68415.m01738 UNC-50 family protein contains Pfam pro...    27   5.8  
At5g20660.1 68418.m02454 24 kDa vacuolar protein, putative simil...    27   7.7  
At3g57920.1 68416.m06456 squamosa promoter-binding protein, puta...    27   7.7  
At3g50620.1 68416.m05535 nodulation protein-related contains wea...    27   7.7  

>At2g37990.1 68415.m04663 ribosome biogenesis regulatory protein
           (RRS1) family protein contains Pfam profile PF04939:
           Ribosome biogenesis regulatory protein (RRS1); similar
           to Ribosome biogenesis regulatory protein homolog
           (Swiss-Prot:Q15050) [Homo sapiens]
          Length = 318

 Score = 60.5 bits (140), Expect = 7e-10
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
 Frame = +3

Query: 219 EFDLGSLLASDTNDLDIKTLKTNKDSYLLALTRDN--AQLLLNKVWELPTERIEEAIVVR 392
           + D+G+LLA + N        +  +     LT      Q + NK++  P+    +  +V+
Sbjct: 12  QVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTETNDGPIVQ 71

Query: 393 LPQPTTILPRAKPVPVPKPLTKWQEFXXXXXXXXXXXDXLQWD 521
           LP PTT LPR K +P PKP TKW+EF           + + WD
Sbjct: 72  LPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWD 114


>At2g17440.1 68415.m02012 leucine-rich repeat family protein
           contains Pfam PF00560: Leucine Rich Repeats
          Length = 526

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 312 TRDNAQLL-LNKVWELPTERIEEA-IVVRLPQPTTILPRAKPVPVP 443
           TR+  ++L L  V  +  E I+ A   +  P  TT LPR+ PVP P
Sbjct: 83  TREATKILDLESVHVVFDELIQRASFCIASPNSTTALPRSVPVPAP 128


>At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger)
           family protein contains zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 660

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 111 KGSVLITMDIVNEILEREQKKADK-YKPITVEKHLELEFDLGSL 239
           K  +L    +V+E  E E+KK  K  KPI V  H E  F + SL
Sbjct: 105 KQQLLSGKGVVDEDDEEEKKKTSKGKKPIDVLSHFECSFCMQSL 148


>At5g53400.1 68418.m06635 nuclear movement family protein contains
           Pfam profile: PF03593 nuclear movement protein
          Length = 304

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
 Frame = +3

Query: 147 EILEREQKKADKYKPITVEKHLELEFDLGSLLASDTNDLDI---KTLKTNKDSYLLALTR 317
           E ++  +KKA+K     VEK +E E    ++ AS    +++   K  +  K+S  +   +
Sbjct: 79  ESVKPVEKKAEKEIVKLVEKKVEKESVKPTIAASSAEPIEVEKPKEEEEKKESGPIVPNK 138

Query: 318 DNAQLLLNKVWELPTERIEEAIVVRLPQPT 407
            N   L N  W    + ++E + V +P PT
Sbjct: 139 GNGTDLENYSW---IQNLQE-VTVNIPVPT 164


>At2g15240.1 68415.m01738 UNC-50 family protein contains Pfam
           profile PF05216: UNC-50 family; contains 5 transmembrane
           domains; similar to inner nuclear membrane RNA-binding
           protein unc-50 related protein (GI:2735550) [Rattus
           norvegicus]
          Length = 252

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 210 NVFRPLLVYIYLLSFV--PFLISHLQYPLLSEHFLF 109
           N F P+ V +Y++ +   P LI+H   PLL  + LF
Sbjct: 156 NSFFPMFVLLYVVHYFLSPLLIAHGFIPLLLSNLLF 191


>At5g20660.1 68418.m02454 24 kDa vacuolar protein, putative similar
           to 24 kDa vacuolar protein VP24 [Ipomoea batatas]
           gi|5821406|dbj|BAA83809
          Length = 910

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/47 (25%), Positives = 29/47 (61%)
 Frame = -2

Query: 235 EPRSNSNSKCFSTVIGLYLSAFFCSLSNISFTISIVIRTLPFYTLEL 95
           E RSN +S  +  V+G Y+  +  SL+ + + +S++++++  + L +
Sbjct: 375 EERSNPDSAVYFDVLGKYMIVYRQSLATMLY-VSVIMQSILIWVLSV 420


>At3g57920.1 68416.m06456 squamosa promoter-binding protein,
           putative similar to squamosa promoter binding
           protein-like 9 [Arabidopsis thaliana] GI:5931677;
           contains Pfam profile PF03110: SBP domain
          Length = 354

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 394 CHNLRQSYPEPSQCLYLSH 450
           CHN R+  P+P+  L+ SH
Sbjct: 125 CHNERRRKPQPTTALFTSH 143


>At3g50620.1 68416.m05535 nodulation protein-related contains weak
           similarity to nodulation protein H (EC 2.8.2.-)
           (Host-specificity of nodulation protein D)
           (Swiss-Prot:P06237) [Rhizobium meliloti]
          Length = 340

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 205 FSTVIGLYLSAFFCS-LSNISFTISIVIRTLP 113
           F+ V GLY+ A     LSN+SF  S +++T P
Sbjct: 34  FAMVCGLYICAVCLKQLSNVSFQTSQLVQTSP 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,364,164
Number of Sequences: 28952
Number of extensions: 212996
Number of successful extensions: 606
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)