BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308F03f (521 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g37990.1 68415.m04663 ribosome biogenesis regulatory protein ... 60 7e-10 At2g17440.1 68415.m02012 leucine-rich repeat family protein cont... 29 1.9 At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger) fa... 28 3.3 At5g53400.1 68418.m06635 nuclear movement family protein contain... 27 5.8 At2g15240.1 68415.m01738 UNC-50 family protein contains Pfam pro... 27 5.8 At5g20660.1 68418.m02454 24 kDa vacuolar protein, putative simil... 27 7.7 At3g57920.1 68416.m06456 squamosa promoter-binding protein, puta... 27 7.7 At3g50620.1 68416.m05535 nodulation protein-related contains wea... 27 7.7 >At2g37990.1 68415.m04663 ribosome biogenesis regulatory protein (RRS1) family protein contains Pfam profile PF04939: Ribosome biogenesis regulatory protein (RRS1); similar to Ribosome biogenesis regulatory protein homolog (Swiss-Prot:Q15050) [Homo sapiens] Length = 318 Score = 60.5 bits (140), Expect = 7e-10 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 2/103 (1%) Frame = +3 Query: 219 EFDLGSLLASDTNDLDIKTLKTNKDSYLLALTRDN--AQLLLNKVWELPTERIEEAIVVR 392 + D+G+LLA + N + + LT Q + NK++ P+ + +V+ Sbjct: 12 QVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTETNDGPIVQ 71 Query: 393 LPQPTTILPRAKPVPVPKPLTKWQEFXXXXXXXXXXXDXLQWD 521 LP PTT LPR K +P PKP TKW+EF + + WD Sbjct: 72 LPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWD 114 >At2g17440.1 68415.m02012 leucine-rich repeat family protein contains Pfam PF00560: Leucine Rich Repeats Length = 526 Score = 29.1 bits (62), Expect = 1.9 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = +3 Query: 312 TRDNAQLL-LNKVWELPTERIEEA-IVVRLPQPTTILPRAKPVPVP 443 TR+ ++L L V + E I+ A + P TT LPR+ PVP P Sbjct: 83 TREATKILDLESVHVVFDELIQRASFCIASPNSTTALPRSVPVPAP 128 >At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger) family protein contains zinc finger, C3HC4 type (RING finger), signature, PROSITE:PS00518 Length = 660 Score = 28.3 bits (60), Expect = 3.3 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +3 Query: 111 KGSVLITMDIVNEILEREQKKADK-YKPITVEKHLELEFDLGSL 239 K +L +V+E E E+KK K KPI V H E F + SL Sbjct: 105 KQQLLSGKGVVDEDDEEEKKKTSKGKKPIDVLSHFECSFCMQSL 148 >At5g53400.1 68418.m06635 nuclear movement family protein contains Pfam profile: PF03593 nuclear movement protein Length = 304 Score = 27.5 bits (58), Expect = 5.8 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%) Frame = +3 Query: 147 EILEREQKKADKYKPITVEKHLELEFDLGSLLASDTNDLDI---KTLKTNKDSYLLALTR 317 E ++ +KKA+K VEK +E E ++ AS +++ K + K+S + + Sbjct: 79 ESVKPVEKKAEKEIVKLVEKKVEKESVKPTIAASSAEPIEVEKPKEEEEKKESGPIVPNK 138 Query: 318 DNAQLLLNKVWELPTERIEEAIVVRLPQPT 407 N L N W + ++E + V +P PT Sbjct: 139 GNGTDLENYSW---IQNLQE-VTVNIPVPT 164 >At2g15240.1 68415.m01738 UNC-50 family protein contains Pfam profile PF05216: UNC-50 family; contains 5 transmembrane domains; similar to inner nuclear membrane RNA-binding protein unc-50 related protein (GI:2735550) [Rattus norvegicus] Length = 252 Score = 27.5 bits (58), Expect = 5.8 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Frame = -3 Query: 210 NVFRPLLVYIYLLSFV--PFLISHLQYPLLSEHFLF 109 N F P+ V +Y++ + P LI+H PLL + LF Sbjct: 156 NSFFPMFVLLYVVHYFLSPLLIAHGFIPLLLSNLLF 191 >At5g20660.1 68418.m02454 24 kDa vacuolar protein, putative similar to 24 kDa vacuolar protein VP24 [Ipomoea batatas] gi|5821406|dbj|BAA83809 Length = 910 Score = 27.1 bits (57), Expect = 7.7 Identities = 12/47 (25%), Positives = 29/47 (61%) Frame = -2 Query: 235 EPRSNSNSKCFSTVIGLYLSAFFCSLSNISFTISIVIRTLPFYTLEL 95 E RSN +S + V+G Y+ + SL+ + + +S++++++ + L + Sbjct: 375 EERSNPDSAVYFDVLGKYMIVYRQSLATMLY-VSVIMQSILIWVLSV 420 >At3g57920.1 68416.m06456 squamosa promoter-binding protein, putative similar to squamosa promoter binding protein-like 9 [Arabidopsis thaliana] GI:5931677; contains Pfam profile PF03110: SBP domain Length = 354 Score = 27.1 bits (57), Expect = 7.7 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +1 Query: 394 CHNLRQSYPEPSQCLYLSH 450 CHN R+ P+P+ L+ SH Sbjct: 125 CHNERRRKPQPTTALFTSH 143 >At3g50620.1 68416.m05535 nodulation protein-related contains weak similarity to nodulation protein H (EC 2.8.2.-) (Host-specificity of nodulation protein D) (Swiss-Prot:P06237) [Rhizobium meliloti] Length = 340 Score = 27.1 bits (57), Expect = 7.7 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = -2 Query: 205 FSTVIGLYLSAFFCS-LSNISFTISIVIRTLP 113 F+ V GLY+ A LSN+SF S +++T P Sbjct: 34 FAMVCGLYICAVCLKQLSNVSFQTSQLVQTSP 65 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,364,164 Number of Sequences: 28952 Number of extensions: 212996 Number of successful extensions: 606 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 564 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 603 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 957410176 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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