BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308F02f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 26 3.0 SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 26 3.0 SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 25 9.0 >SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sfc3|Schizosaccharomyces pombe|chr 2|||Manual Length = 1339 Score = 26.2 bits (55), Expect = 3.0 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Frame = +1 Query: 121 RSSNKKILN-PINPREVKSHLPVLRQWQVAEGRLQVVQPTTTRSXXXXXXXXQRIQRVTM 297 +S+N + + PI P + +++LP L V+EG +Q T S +T Sbjct: 493 KSANISVTSSPIRPSKNENNLPSLAISPVSEGFIQ----NATISTPSTSSNLSIAGSLTP 548 Query: 298 LKKLTIKKCLIVLKEQHFSRDYHLIRCRHLK 390 K I + L LK F+ D H+ + HL+ Sbjct: 549 SKTSRIYRGLAPLKNPEFNED-HVKKAEHLE 578 >SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces pombe|chr 1|||Manual Length = 270 Score = 26.2 bits (55), Expect = 3.0 Identities = 15/55 (27%), Positives = 28/55 (50%) Frame = +3 Query: 312 YKEMLNSLEGAAFQSRLPFDKMSSLEAECFSDLQGPSNCAFIQIRNRILKMWFAD 476 Y E+LNS + A + ++ FD+ S E + S+ + +Q+ L +W +D Sbjct: 183 YYEILNSPDRACYLAKQAFDEAIS-ELDSLSEESYKDSTLIMQLLRDNLTLWTSD 236 >SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 399 Score = 24.6 bits (51), Expect = 9.0 Identities = 7/21 (33%), Positives = 15/21 (71%) Frame = +3 Query: 423 NCAFIQIRNRILKMWFADPKK 485 +C +IQ++ L++W+ + KK Sbjct: 15 HCKYIQLKETKLEIWYLEKKK 35 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,727,552 Number of Sequences: 5004 Number of extensions: 27533 Number of successful extensions: 66 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 66 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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