Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   3.0  
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    26   3.0  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    25   9.0  

>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = +1

Query: 121 RSSNKKILN-PINPREVKSHLPVLRQWQVAEGRLQVVQPTTTRSXXXXXXXXQRIQRVTM 297
           +S+N  + + PI P + +++LP L    V+EG +Q      T S             +T 
Sbjct: 493 KSANISVTSSPIRPSKNENNLPSLAISPVSEGFIQ----NATISTPSTSSNLSIAGSLTP 548

Query: 298 LKKLTIKKCLIVLKEQHFSRDYHLIRCRHLK 390
            K   I + L  LK   F+ D H+ +  HL+
Sbjct: 549 SKTSRIYRGLAPLKNPEFNED-HVKKAEHLE 578


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 312 YKEMLNSLEGAAFQSRLPFDKMSSLEAECFSDLQGPSNCAFIQIRNRILKMWFAD 476
           Y E+LNS + A + ++  FD+  S E +  S+     +   +Q+    L +W +D
Sbjct: 183 YYEILNSPDRACYLAKQAFDEAIS-ELDSLSEESYKDSTLIMQLLRDNLTLWTSD 236


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +3

Query: 423 NCAFIQIRNRILKMWFADPKK 485
           +C +IQ++   L++W+ + KK
Sbjct: 15  HCKYIQLKETKLEIWYLEKKK 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,727,552
Number of Sequences: 5004
Number of extensions: 27533
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)