Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)               79   3e-15
SB_1291| Best HMM Match : SWIRM (HMM E-Value=5e-23)                    79   3e-15
SB_31708| Best HMM Match : GTP_CDC (HMM E-Value=0)                     28   5.4  

>SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 37/66 (56%), Positives = 51/66 (77%), Gaps = 3/66 (4%)
 Frame = +3

Query: 333 LEGAAFQSRLPFDKMSSLEAECFSDL-QGPSNC--AFIQIRNRILKMWFADPKKQLTQEQ 503
           LEGAAFQSRLPFDKM+S E+ CF D+ QGP +    F+ IRNR+L++W  +P++QLT E 
Sbjct: 145 LEGAAFQSRLPFDKMTSQESSCFPDISQGPPHLQKQFLYIRNRVLQLWLENPQQQLTLEA 204

Query: 504 AVKKME 521
           A+ ++E
Sbjct: 205 AIPQIE 210



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 78  SRRKRAKVENRELDEKL 128
           SRRKR +VE  E+DEKL
Sbjct: 83  SRRKRGEVEYTEVDEKL 99


>SB_1291| Best HMM Match : SWIRM (HMM E-Value=5e-23)
          Length = 158

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 37/66 (56%), Positives = 51/66 (77%), Gaps = 3/66 (4%)
 Frame = +3

Query: 333 LEGAAFQSRLPFDKMSSLEAECFSDL-QGPSNC--AFIQIRNRILKMWFADPKKQLTQEQ 503
           LEGAAFQSRLPFDKM+S E+ CF D+ QGP +    F+ IRNR+L++W  +P++QLT E 
Sbjct: 56  LEGAAFQSRLPFDKMTSQESSCFPDISQGPPHLQKQFLYIRNRVLQLWLENPQQQLTLEA 115

Query: 504 AVKKME 521
           A+ ++E
Sbjct: 116 AIPQIE 121


>SB_31708| Best HMM Match : GTP_CDC (HMM E-Value=0)
          Length = 272

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +3

Query: 399 FSDLQGPSNCAFIQIRNRILKMWFADPKKQLTQE 500
           +++++ P +C FI++RN +++    D  K +TQ+
Sbjct: 220 YAEVENPDHCDFIKLRNMLVRTHMQD-LKDVTQD 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,564,953
Number of Sequences: 59808
Number of extensions: 190493
Number of successful extensions: 423
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)