BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308F02f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 3e-15 SB_1291| Best HMM Match : SWIRM (HMM E-Value=5e-23) 79 3e-15 SB_31708| Best HMM Match : GTP_CDC (HMM E-Value=0) 28 5.4 >SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 310 Score = 78.6 bits (185), Expect = 3e-15 Identities = 37/66 (56%), Positives = 51/66 (77%), Gaps = 3/66 (4%) Frame = +3 Query: 333 LEGAAFQSRLPFDKMSSLEAECFSDL-QGPSNC--AFIQIRNRILKMWFADPKKQLTQEQ 503 LEGAAFQSRLPFDKM+S E+ CF D+ QGP + F+ IRNR+L++W +P++QLT E Sbjct: 145 LEGAAFQSRLPFDKMTSQESSCFPDISQGPPHLQKQFLYIRNRVLQLWLENPQQQLTLEA 204 Query: 504 AVKKME 521 A+ ++E Sbjct: 205 AIPQIE 210 Score = 27.1 bits (57), Expect = 9.4 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = +3 Query: 78 SRRKRAKVENRELDEKL 128 SRRKR +VE E+DEKL Sbjct: 83 SRRKRGEVEYTEVDEKL 99 >SB_1291| Best HMM Match : SWIRM (HMM E-Value=5e-23) Length = 158 Score = 78.6 bits (185), Expect = 3e-15 Identities = 37/66 (56%), Positives = 51/66 (77%), Gaps = 3/66 (4%) Frame = +3 Query: 333 LEGAAFQSRLPFDKMSSLEAECFSDL-QGPSNC--AFIQIRNRILKMWFADPKKQLTQEQ 503 LEGAAFQSRLPFDKM+S E+ CF D+ QGP + F+ IRNR+L++W +P++QLT E Sbjct: 56 LEGAAFQSRLPFDKMTSQESSCFPDISQGPPHLQKQFLYIRNRVLQLWLENPQQQLTLEA 115 Query: 504 AVKKME 521 A+ ++E Sbjct: 116 AIPQIE 121 >SB_31708| Best HMM Match : GTP_CDC (HMM E-Value=0) Length = 272 Score = 27.9 bits (59), Expect = 5.4 Identities = 10/34 (29%), Positives = 23/34 (67%) Frame = +3 Query: 399 FSDLQGPSNCAFIQIRNRILKMWFADPKKQLTQE 500 +++++ P +C FI++RN +++ D K +TQ+ Sbjct: 220 YAEVENPDHCDFIKLRNMLVRTHMQD-LKDVTQD 252 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,564,953 Number of Sequences: 59808 Number of extensions: 190493 Number of successful extensions: 423 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 360 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 421 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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