BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308F02f (521 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AY152852-1|AAN62580.1| 770|Caenorhabditis elegans suppressor of... 35 0.031 AL032636-3|CAA21604.1| 770|Caenorhabditis elegans Hypothetical ... 35 0.031 Z50756-1|CAA90637.2| 737|Caenorhabditis elegans Hypothetical pr... 32 0.22 Z35602-2|CAA84671.3| 824|Caenorhabditis elegans Hypothetical pr... 27 6.2 Z77652-11|CAI70405.1| 310|Caenorhabditis elegans Hypothetical p... 27 8.1 >AY152852-1|AAN62580.1| 770|Caenorhabditis elegans suppressor of presenilin 5 protein. Length = 770 Score = 35.1 bits (77), Expect = 0.031 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Frame = +3 Query: 327 NSLEGAAFQSRLPFDKMSSLEAECFSDLQGPSNC--AFIQIRNRILKMWFADPKKQLT 494 N+L AA +RLPFD+ + E F +L F+ +RN L W +P K+ T Sbjct: 26 NALAAAASAARLPFDRPTDHELAFFPELWEHKTAVEVFLLLRNSTLATWQYNPLKECT 83 >AL032636-3|CAA21604.1| 770|Caenorhabditis elegans Hypothetical protein Y40B1B.6 protein. Length = 770 Score = 35.1 bits (77), Expect = 0.031 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Frame = +3 Query: 327 NSLEGAAFQSRLPFDKMSSLEAECFSDLQGPSNC--AFIQIRNRILKMWFADPKKQLT 494 N+L AA +RLPFD+ + E F +L F+ +RN L W +P K+ T Sbjct: 26 NALAAAASAARLPFDRPTDHELAFFPELWEHKTAVEVFLLLRNSTLATWQYNPLKECT 83 >Z50756-1|CAA90637.2| 737|Caenorhabditis elegans Hypothetical protein T08D10.2 protein. Length = 737 Score = 32.3 bits (70), Expect = 0.22 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = +3 Query: 330 SLEGAAFQSRLPFDKMSSLEAECFSDLQGPSNCA--FIQIRNRILKMWFADPKKQLTQEQ 503 SL A + + D+ + +EA F ++Q + + F+ IRN L +W A + T E Sbjct: 69 SLAEVARRHGISADRPTEIEAAFFPEVQMSRSFSDVFLMIRNTTLSIWLASATTECTAED 128 Query: 504 AVKKM 518 +K + Sbjct: 129 VIKHL 133 >Z35602-2|CAA84671.3| 824|Caenorhabditis elegans Hypothetical protein R13G10.2 protein. Length = 824 Score = 27.5 bits (58), Expect = 6.2 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +3 Query: 417 PSNCAFIQIRNRILKMWFADPKKQLT 494 P + ++Q+RN I+ MW P +LT Sbjct: 274 PISIYYLQVRNTIIAMWLKHPFVELT 299 >Z77652-11|CAI70405.1| 310|Caenorhabditis elegans Hypothetical protein C06B3.13 protein. Length = 310 Score = 27.1 bits (57), Expect = 8.1 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +3 Query: 21 FSDRFQLITLFLNISLLKMSRRKRAKVEN 107 +S F ++ LFLNI ++ ++R K+EN Sbjct: 172 YSRLFPVLCLFLNIGIILYLSKRRKKMEN 200 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,584,334 Number of Sequences: 27780 Number of extensions: 155704 Number of successful extensions: 350 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 347 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 350 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1017709248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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