Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY152852-1|AAN62580.1|  770|Caenorhabditis elegans suppressor of...    35   0.031
AL032636-3|CAA21604.1|  770|Caenorhabditis elegans Hypothetical ...    35   0.031
Z50756-1|CAA90637.2|  737|Caenorhabditis elegans Hypothetical pr...    32   0.22 
Z35602-2|CAA84671.3|  824|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical p...    27   8.1  

>AY152852-1|AAN62580.1|  770|Caenorhabditis elegans suppressor of
           presenilin 5 protein.
          Length = 770

 Score = 35.1 bits (77), Expect = 0.031
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 327 NSLEGAAFQSRLPFDKMSSLEAECFSDLQGPSNC--AFIQIRNRILKMWFADPKKQLT 494
           N+L  AA  +RLPFD+ +  E   F +L         F+ +RN  L  W  +P K+ T
Sbjct: 26  NALAAAASAARLPFDRPTDHELAFFPELWEHKTAVEVFLLLRNSTLATWQYNPLKECT 83


>AL032636-3|CAA21604.1|  770|Caenorhabditis elegans Hypothetical
           protein Y40B1B.6 protein.
          Length = 770

 Score = 35.1 bits (77), Expect = 0.031
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 327 NSLEGAAFQSRLPFDKMSSLEAECFSDLQGPSNC--AFIQIRNRILKMWFADPKKQLT 494
           N+L  AA  +RLPFD+ +  E   F +L         F+ +RN  L  W  +P K+ T
Sbjct: 26  NALAAAASAARLPFDRPTDHELAFFPELWEHKTAVEVFLLLRNSTLATWQYNPLKECT 83


>Z50756-1|CAA90637.2|  737|Caenorhabditis elegans Hypothetical
           protein T08D10.2 protein.
          Length = 737

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +3

Query: 330 SLEGAAFQSRLPFDKMSSLEAECFSDLQGPSNCA--FIQIRNRILKMWFADPKKQLTQEQ 503
           SL   A +  +  D+ + +EA  F ++Q   + +  F+ IRN  L +W A    + T E 
Sbjct: 69  SLAEVARRHGISADRPTEIEAAFFPEVQMSRSFSDVFLMIRNTTLSIWLASATTECTAED 128

Query: 504 AVKKM 518
            +K +
Sbjct: 129 VIKHL 133


>Z35602-2|CAA84671.3|  824|Caenorhabditis elegans Hypothetical
           protein R13G10.2 protein.
          Length = 824

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 417 PSNCAFIQIRNRILKMWFADPKKQLT 494
           P +  ++Q+RN I+ MW   P  +LT
Sbjct: 274 PISIYYLQVRNTIIAMWLKHPFVELT 299


>Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.13 protein.
          Length = 310

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 21  FSDRFQLITLFLNISLLKMSRRKRAKVEN 107
           +S  F ++ LFLNI ++    ++R K+EN
Sbjct: 172 YSRLFPVLCLFLNIGIILYLSKRRKKMEN 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,584,334
Number of Sequences: 27780
Number of extensions: 155704
Number of successful extensions: 350
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)