Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308F02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62830.1 68414.m07093 amine oxidase family protein / SWIRM do...    30   1.1  
At2g20240.1 68415.m02365 expressed protein                             28   4.4  

>At1g62830.1 68414.m07093 amine oxidase family protein / SWIRM
           domain-containing protein contains Pfam profile: PF01593
           Flavin containing amine oxidase
          Length = 844

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 384 LEAECFSDLQGPSNCAFIQIRNRILKMWFADPKKQLTQEQAVKKM 518
           +EA   S + G     +I +RN I+ +W ++    LT++ A++ +
Sbjct: 179 IEANVVSIIGGKDQANYIVVRNHIIALWRSNVSNWLTRDHALESI 223


>At2g20240.1 68415.m02365 expressed protein 
          Length = 713

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 436 INAQFEGPCKSEKHSASSDDILSNG 362
           I    EG C++E  S+SS  +LSNG
Sbjct: 253 IRETVEGHCRNETLSSSSSSVLSNG 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,822,079
Number of Sequences: 28952
Number of extensions: 138753
Number of successful extensions: 294
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)