BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308E12f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 217 6e-58 SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 25 5.2 SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 25 5.2 SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 5.2 SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.8 SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 25 6.8 SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 25 9.0 SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 25 9.0 SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 25 9.0 >SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces pombe|chr 3|||Manual Length = 253 Score = 217 bits (531), Expect = 6e-58 Identities = 93/130 (71%), Positives = 119/130 (91%) Frame = +1 Query: 109 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 288 ++++KEWVPVTKLGRLV+ GKI +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ Sbjct: 28 RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86 Query: 289 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 468 KQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG Sbjct: 87 KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTA 146 Query: 469 IGKPHTVPLQ 498 +G PHTVP++ Sbjct: 147 LGDPHTVPVK 156 >SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces pombe|chr 1|||Manual Length = 704 Score = 25.4 bits (53), Expect = 5.2 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = -3 Query: 435 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 301 +R LS + GSG L N+T+ +A+G T +SG Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417 >SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr 2|||Manual Length = 606 Score = 25.4 bits (53), Expect = 5.2 Identities = 11/41 (26%), Positives = 23/41 (56%) Frame = +1 Query: 112 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 234 +D+ EW P++ LV ++ E +++ K++E+ID Sbjct: 241 KDKPEWQPISLKSELVPNEELLGEEYSHIYHTISKKYELID 281 >SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 374 Score = 25.4 bits (53), Expect = 5.2 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Frame = -3 Query: 504 VTLQRDGVWLSDL-VTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNK 328 +T ++S + VTP +SS+ + ++ +A + A+ HT N +V Sbjct: 241 ITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAALALNAS-KASNHTSLNAGAIVGIVIG 299 Query: 327 CLETCALSGTCLFLY 283 C+ + C+FLY Sbjct: 300 CVAFAVVMALCIFLY 314 >SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 536 Score = 25.0 bits (52), Expect = 6.8 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = -3 Query: 480 WLSDLVTPVTSSNW*NRQLSKDNSASN 400 ++S++VTP T++NW N S +S S+ Sbjct: 192 YVSEVVTPTTTNNW-NSSSSFTSSTSS 217 >SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharomyces pombe|chr 2|||Manual Length = 436 Score = 25.0 bits (52), Expect = 6.8 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = +2 Query: 218 NSRSLISSSARP*MMRF*RSCLYRNKHVPDSAHVSRH 328 +SR+ I S+ +++ S R KH+P+ ++RH Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384 >SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharomyces pombe|chr 1|||Manual Length = 641 Score = 24.6 bits (51), Expect = 9.0 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 3/77 (3%) Frame = +1 Query: 223 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG--HIGLGVKCSKEVA- 393 E F G + E + ++P G TRF V D NG I G+ + E A Sbjct: 378 ETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRFTGEVLTIDENGKDKIVPGLYAAGEAAC 437 Query: 394 TAIRGAIILAKLSVLPV 444 ++ G L S+L + Sbjct: 438 VSVHGGNRLGANSLLDI 454 >SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizosaccharomyces pombe|chr 1|||Manual Length = 1401 Score = 24.6 bits (51), Expect = 9.0 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Frame = +2 Query: 314 HVSRHLL-PLATTTVILV-WV*SAARKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 487 +V HL P T L W + + + + F +L L +FE + SE H P Sbjct: 613 YVESHLNGPTERTAASLTNWYSTLLKNTQIRFRKILRFSETLNSRFENASDFVISEGHLP 672 Query: 488 SL 493 L Sbjct: 673 DL 674 >SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 215 Score = 24.6 bits (51), Expect = 9.0 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = -3 Query: 399 GSGDFLAALHTQTNMTVVVANGNKCLETCA 310 G+GD H +T T +V +K L+ CA Sbjct: 117 GTGDARLLKHKETGKTRLVMRRDKTLKVCA 146 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,047,113 Number of Sequences: 5004 Number of extensions: 42829 Number of successful extensions: 123 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 119 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 122 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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