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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308E12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   217   6e-58
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   5.2  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   5.2  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   5.2  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   6.8  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    25   9.0  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   9.0  
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa...    25   9.0  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  217 bits (531), Expect = 6e-58
 Identities = 93/130 (71%), Positives = 119/130 (91%)
 Frame = +1

Query: 109 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 288
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86

Query: 289 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 468
           KQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  
Sbjct: 87  KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTA 146

Query: 469 IGKPHTVPLQ 498
           +G PHTVP++
Sbjct: 147 LGDPHTVPVK 156


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 435 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 301
           +R LS     + GSG     L    N+T+ +A+G     T  +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 112 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 234
           +D+ EW P++    LV   ++   E  +++    K++E+ID
Sbjct: 241 KDKPEWQPISLKSELVPNEELLGEEYSHIYHTISKKYELID 281


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = -3

Query: 504 VTLQRDGVWLSDL-VTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNK 328
           +T      ++S + VTP +SS+  + ++    +A   +    A+ HT  N   +V     
Sbjct: 241 ITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAALALNAS-KASNHTSLNAGAIVGIVIG 299

Query: 327 CLETCALSGTCLFLY 283
           C+    +   C+FLY
Sbjct: 300 CVAFAVVMALCIFLY 314


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 480 WLSDLVTPVTSSNW*NRQLSKDNSASN 400
           ++S++VTP T++NW N   S  +S S+
Sbjct: 192 YVSEVVTPTTTNNW-NSSSSFTSSTSS 217


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 218 NSRSLISSSARP*MMRF*RSCLYRNKHVPDSAHVSRH 328
           +SR+ I S+     +++  S   R KH+P+   ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
 Frame = +1

Query: 223 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG--HIGLGVKCSKEVA- 393
           E    F G  +  E + ++P       G  TRF   V   D NG   I  G+  + E A 
Sbjct: 378 ETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRFTGEVLTIDENGKDKIVPGLYAAGEAAC 437

Query: 394 TAIRGAIILAKLSVLPV 444
            ++ G   L   S+L +
Sbjct: 438 VSVHGGNRLGANSLLDI 454


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
 Frame = +2

Query: 314 HVSRHLL-PLATTTVILV-WV*SAARKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 487
           +V  HL  P   T   L  W  +  + + + F  +L     L  +FE  +    SE H P
Sbjct: 613 YVESHLNGPTERTAASLTNWYSTLLKNTQIRFRKILRFSETLNSRFENASDFVISEGHLP 672

Query: 488 SL 493
            L
Sbjct: 673 DL 674


>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
           Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 399 GSGDFLAALHTQTNMTVVVANGNKCLETCA 310
           G+GD     H +T  T +V   +K L+ CA
Sbjct: 117 GTGDARLLKHKETGKTRLVMRRDKTLKVCA 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,113
Number of Sequences: 5004
Number of extensions: 42829
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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