BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308E12f (521 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_06_0386 + 33555682-33556344,33557138-33557299 215 1e-56 07_01_0756 + 5819367-5820038,5820847-5821005 212 1e-55 03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 1e-05 07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 42 2e-04 09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 29 1.7 07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613... 29 1.7 11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 2.3 11_01_0395 + 2999855-2999920,3000605-3002191 28 5.2 11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 27 6.9 08_01_0312 + 2764744-2767390,2767632-2767990 27 6.9 08_02_0675 + 19929932-19930005,19930116-19930222,19931604-199319... 27 9.1 >03_06_0386 + 33555682-33556344,33557138-33557299 Length = 274 Score = 215 bits (526), Expect = 1e-56 Identities = 96/128 (75%), Positives = 116/128 (90%) Frame = +1 Query: 109 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 288 ++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQ Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96 Query: 289 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 468 KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK Sbjct: 97 KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 156 Query: 469 IGKPHTVP 492 IG+PHTVP Sbjct: 157 IGQPHTVP 164 >07_01_0756 + 5819367-5820038,5820847-5821005 Length = 276 Score = 212 bits (518), Expect = 1e-55 Identities = 96/128 (75%), Positives = 115/128 (89%) Frame = +1 Query: 109 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 288 ++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQ Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99 Query: 289 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 468 KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 159 Query: 469 IGKPHTVP 492 IGKPHTVP Sbjct: 160 IGKPHTVP 167 >03_04_0238 - 19219040-19219218,19220296-19220350,19221606-19221690, 19222068-19222798 Length = 349 Score = 46.8 bits (106), Expect = 1e-05 Identities = 21/63 (33%), Positives = 39/63 (61%) Frame = +1 Query: 256 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 435 ++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++ Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230 Query: 436 LPV 444 + V Sbjct: 231 VTV 233 >07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 Length = 233 Score = 42.3 bits (95), Expect = 2e-04 Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Frame = +1 Query: 328 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTV 489 FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTV 51 >09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578, 21497679-21497889,21497977-21498170,21498263-21498364, 21498525-21499879,21501193-21501494,21501600-21501750, 21501838-21502102,21502155-21502362,21502467-21502660, 21502749-21502850,21503481-21503680,21504010-21504846, 21505806-21506107,21506209-21506359,21506447-21506684, 21506764-21506971,21507078-21507271,21507322-21507462, 21513484-21514811,21515923-21516227,21516331-21516481, 21516570-21516807,21516881-21517088,21517197-21517366, 21517451-21517549,21517708-21519029,21521601-21521683 Length = 3314 Score = 29.5 bits (63), Expect = 1.7 Identities = 19/54 (35%), Positives = 28/54 (51%) Frame = -3 Query: 495 QRDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANG 334 +R VW++D TPVT+S+ LS NS++ D + TN+T A G Sbjct: 104 RRTVVWVADRGTPVTNSSSSAPTLSLTNSSNLVLSDADGGVRWTTNITDDAAGG 157 Score = 28.3 bits (60), Expect = 4.0 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = -3 Query: 495 QRDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMT 352 QR VW++D TPVT+++ LS NS++ D + TN+T Sbjct: 1804 QRTVVWVADRGTPVTNTSSSAPTLSLTNSSNLVLSDADGRVRWSTNIT 1851 >07_03_0681 + 20659789-20659839,20660030-20660170,20661294-20661399, 20661625-20661806,20661888-20662113,20662198-20662624, 20662844-20663189,20663271-20663849 Length = 685 Score = 29.5 bits (63), Expect = 1.7 Identities = 14/52 (26%), Positives = 24/52 (46%) Frame = -3 Query: 507 PVTLQRDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMT 352 P L D ++ + + + W NR +++ + G G ALH TNM+ Sbjct: 352 PDDLDEDNRGMAQIRDDLAGAMWNNRGMAEAGGGNGGHGGHHGALHWTTNMS 403 >11_04_0439 + 17749634-17749858,17750164-17750301,17750770-17750943, 17751099-17751184,17751264-17751525,17751616-17751815, 17753631-17754086,17754198-17754474,17754694-17754828, 17754946-17755026,17756305-17756400,17756676-17756771, 17756844-17756900,17756975-17757043,17757158-17757237, 17758185-17758329,17758422-17758511,17758914-17758994, 17759103-17759198,17759279-17759335,17759417-17759461, 17759547-17759612,17760304-17760350,17762771-17762865, 17763375-17763393,17763438-17763498,17763637-17763660 Length = 1085 Score = 29.1 bits (62), Expect = 2.3 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -3 Query: 390 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 274 +F+A LHT +M V +E C LS F+ +HD Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693 >11_01_0395 + 2999855-2999920,3000605-3002191 Length = 550 Score = 27.9 bits (59), Expect = 5.2 Identities = 12/40 (30%), Positives = 23/40 (57%) Frame = +1 Query: 196 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 315 +F +++ ++IDF L L D + I+P+ R G++T Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276 >11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367, 4004474-4004556,4004661-4004775,4005309-4005400, 4005558-4005612,4005689-4005834,4005888-4006001, 4006149-4006342,4006985-4007112,4008526-4008583, 4009800-4009876,4010214-4010263,4010336-4010515, 4010633-4010731,4010816-4011133,4011221-4011281, 4011693-4012781,4012951-4013005,4013133-4013291, 4013923-4014442 Length = 1406 Score = 27.5 bits (58), Expect = 6.9 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +1 Query: 112 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLG 246 + KE +P G V G+ +++ + SLPIK++ + FF G Sbjct: 805 DGSKEVIPQEYCGLEVLSGEAAWSKNVLVPSLPIKKYPVHSFFSG 849 >08_01_0312 + 2764744-2767390,2767632-2767990 Length = 1001 Score = 27.5 bits (58), Expect = 6.9 Identities = 20/42 (47%), Positives = 23/42 (54%) Frame = +2 Query: 308 SAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCL 433 + HV LLPLAT T +A +PLP ALLSL S L Sbjct: 5 AVHVLLLLLPLATIT--------SASSAPLPLLALLSLRSSL 38 >08_02_0675 + 19929932-19930005,19930116-19930222,19931604-19931986, 19932306-19932386,19933249-19933281 Length = 225 Score = 27.1 bits (57), Expect = 9.1 Identities = 16/58 (27%), Positives = 31/58 (53%) Frame = +2 Query: 299 VPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCLFYQFEEVTGVTRS 472 VP + +SR L A I W + ++ F+ LSL+SC+++ E++ ++R+ Sbjct: 156 VPSAEIISRRL---ALFAFIAGWSIVTSAETGPTFQLALSLVSCIYFLNEKMKNLSRA 210 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,873,232 Number of Sequences: 37544 Number of extensions: 307651 Number of successful extensions: 871 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 845 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 869 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1142636160 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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