Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308E12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 215 1e-56
07_01_0756 + 5819367-5820038,5820847-5821005 212 1e-55
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 1e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 42 2e-04
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 29 1.7
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613... 29 1.7
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 2.3
11_01_0395 + 2999855-2999920,3000605-3002191 28 5.2
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 27 6.9
08_01_0312 + 2764744-2767390,2767632-2767990 27 6.9
08_02_0675 + 19929932-19930005,19930116-19930222,19931604-199319... 27 9.1
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 215 bits (526), Expect = 1e-56
Identities = 96/128 (75%), Positives = 116/128 (90%)
Frame = +1
Query: 109 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 288
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96
Query: 289 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 468
KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97 KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 156
Query: 469 IGKPHTVP 492
IG+PHTVP
Sbjct: 157 IGQPHTVP 164
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 212 bits (518), Expect = 1e-55
Identities = 96/128 (75%), Positives = 115/128 (89%)
Frame = +1
Query: 109 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 288
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99
Query: 289 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 468
KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 159
Query: 469 IGKPHTVP 492
IGKPHTVP
Sbjct: 160 IGKPHTVP 167
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +1
Query: 256 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 435
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 436 LPV 444
+ V
Sbjct: 231 VTV 233
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 328 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTV 489
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTV 51
>09_06_0198 -
21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -3
Query: 495 QRDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANG 334
+R VW++D TPVT+S+ LS NS++ D + TN+T A G
Sbjct: 104 RRTVVWVADRGTPVTNSSSSAPTLSLTNSSNLVLSDADGGVRWTTNITDDAAGG 157
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -3
Query: 495 QRDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMT 352
QR VW++D TPVT+++ LS NS++ D + TN+T
Sbjct: 1804 QRTVVWVADRGTPVTNTSSSAPTLSLTNSSNLVLSDADGRVRWSTNIT 1851
>07_03_0681 +
20659789-20659839,20660030-20660170,20661294-20661399,
20661625-20661806,20661888-20662113,20662198-20662624,
20662844-20663189,20663271-20663849
Length = 685
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -3
Query: 507 PVTLQRDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMT 352
P L D ++ + + + W NR +++ + G G ALH TNM+
Sbjct: 352 PDDLDEDNRGMAQIRDDLAGAMWNNRGMAEAGGGNGGHGGHHGALHWTTNMS 403
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 390 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 274
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 196 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 315
+F +++ ++IDF L L D + I+P+ R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276
>11_01_0515 +
4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 112 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLG 246
+ KE +P G V G+ +++ + SLPIK++ + FF G
Sbjct: 805 DGSKEVIPQEYCGLEVLSGEAAWSKNVLVPSLPIKKYPVHSFFSG 849
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/42 (47%), Positives = 23/42 (54%)
Frame = +2
Query: 308 SAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCL 433
+ HV LLPLAT T +A +PLP ALLSL S L
Sbjct: 5 AVHVLLLLLPLATIT--------SASSAPLPLLALLSLRSSL 38
>08_02_0675 +
19929932-19930005,19930116-19930222,19931604-19931986,
19932306-19932386,19933249-19933281
Length = 225
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +2
Query: 299 VPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCLFYQFEEVTGVTRS 472
VP + +SR L A I W + ++ F+ LSL+SC+++ E++ ++R+
Sbjct: 156 VPSAEIISRRL---ALFAFIAGWSIVTSAETGPTFQLALSLVSCIYFLNEKMKNLSRA 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,873,232
Number of Sequences: 37544
Number of extensions: 307651
Number of successful extensions: 871
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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