Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308E12f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 231 2e-61
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 225 1e-59
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 225 1e-59
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 225 1e-59
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 225 1e-59
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 223 4e-59
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 7e-06
At2g41960.1 68415.m05191 expressed protein 29 1.9
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 2.5
At3g01450.1 68416.m00069 expressed protein 29 2.5
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 3.3
At2g42230.2 68415.m05226 tubulin-specific chaperone C-related we... 28 3.3
At2g42230.1 68415.m05227 tubulin-specific chaperone C-related we... 28 3.3
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 27 7.7
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 27 7.7
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 231 bits (566), Expect = 2e-61
Identities = 102/126 (80%), Positives = 119/126 (94%)
Frame = +1
Query: 115 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 294
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID +GPSL DEV+KIMPVQKQ
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100
Query: 295 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 474
TRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIG
Sbjct: 101 TRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIG 160
Query: 475 KPHTVP 492
KPHTVP
Sbjct: 161 KPHTVP 166
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 225 bits (551), Expect = 1e-59
Identities = 102/126 (80%), Positives = 115/126 (91%)
Frame = +1
Query: 115 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 294
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 295 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 474
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 475 KPHTVP 492
KPHTVP
Sbjct: 169 KPHTVP 174
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 225 bits (551), Expect = 1e-59
Identities = 102/126 (80%), Positives = 115/126 (91%)
Frame = +1
Query: 115 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 294
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 295 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 474
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 475 KPHTVP 492
KPHTVP
Sbjct: 169 KPHTVP 174
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 225 bits (551), Expect = 1e-59
Identities = 102/126 (80%), Positives = 115/126 (91%)
Frame = +1
Query: 115 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 294
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 295 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 474
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 475 KPHTVP 492
KPHTVP
Sbjct: 169 KPHTVP 174
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 225 bits (551), Expect = 1e-59
Identities = 102/126 (80%), Positives = 115/126 (91%)
Frame = +1
Query: 115 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 294
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 295 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 474
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 475 KPHTVP 492
KPHTVP
Sbjct: 169 KPHTVP 174
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 223 bits (546), Expect = 4e-59
Identities = 100/126 (79%), Positives = 115/126 (91%)
Frame = +1
Query: 115 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 294
++++WVPVTKLGRLV G I ++E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109
Query: 295 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 474
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 169
Query: 475 KPHTVP 492
KPHTVP
Sbjct: 170 KPHTVP 175
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 7e-06
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +1
Query: 259 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 438
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 439 PV 444
V
Sbjct: 209 QV 210
>At2g41960.1 68415.m05191 expressed protein
Length = 1215
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 419 LLSCLFYQFEEVTGV--TRSESHTPSLCKVTGKCGS 520
+LS Y+ EE+ V T + TPSLCK T K G+
Sbjct: 823 VLSLTTYKAEEIKDVSPTVKPAGTPSLCKATDKLGN 858
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 2.5
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -1
Query: 467 LLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 288
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 287 CTGMIFRTSSFR 252
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = -1
Query: 488 TVCGFPILLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVR 309
T+ +LL Q L++ + A + VA + H +P + P L P N R+R
Sbjct: 159 TIDQLDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIR 217
Query: 308 CPARVCF 288
A CF
Sbjct: 218 AKASTCF 224
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 325 AFVAIGDNNGHIGLGVKCSKE 387
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At2g42230.2 68415.m05226 tubulin-specific chaperone C-related weak
similarity to Tubulin-specific chaperone C
(Tubulin-folding cofactor C) (CFC) (Swiss-Prot:Q15814)
[Homo sapiens]
Length = 568
Score = 28.3 bits (60), Expect = 3.3
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = -3
Query: 516 PHLPVTLQRDGVWL-SDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVA 340
P +PV + WL D+ + + S + NR K+N ASN S A + + V +
Sbjct: 250 PAVPVPASQVNDWLLKDIASALESIS--NRISGKENGASNASDQNAAMADSSVALNKVSS 307
Query: 339 NGNKCLETCALSGTCLFLYRHDL 271
N +S T LF DL
Sbjct: 308 NDRGPCIIEGVSKTSLFKQASDL 330
>At2g42230.1 68415.m05227 tubulin-specific chaperone C-related weak
similarity to Tubulin-specific chaperone C
(Tubulin-folding cofactor C) (CFC) (Swiss-Prot:Q15814)
[Homo sapiens]
Length = 562
Score = 28.3 bits (60), Expect = 3.3
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = -3
Query: 516 PHLPVTLQRDGVWL-SDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVA 340
P +PV + WL D+ + + S + NR K+N ASN S A + + V +
Sbjct: 250 PAVPVPASQVNDWLLKDIASALESIS--NRISGKENGASNASDQNAAMADSSVALNKVSS 307
Query: 339 NGNKCLETCALSGTCLFLYRHDL 271
N +S T LF DL
Sbjct: 308 NDRGPCIIEGVSKTSLFKQASDL 330
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 305 PARVCFCTGMIFRTSSFRDGPRKKSMISNSL 213
P R FC+G+ +S + PR+KS +S+ L
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKL 73
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 474 SDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAAL 373
+D ++P+ SSN + L K SAS+ +G LA L
Sbjct: 404 TDALSPLDSSNLSHVTLPKSKSASSENGSMLAPL 437
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,011,783
Number of Sequences: 28952
Number of extensions: 239764
Number of successful extensions: 649
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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