Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308E11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    27   2.2  
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces...    26   3.0  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   5.2  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   9.0  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   9.0  

>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 276 KVFFYHYKYITAYIIINRTYS 338
           K+F YH+ +I  Y II+ +Y+
Sbjct: 2   KLFLYHFTFIVYYFIISFSYA 22


>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 183

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 120 NQPQSSNTNDKSKGGVHVRGPA 185
           NQ + SN+N +S G + +RG A
Sbjct: 76  NQTKPSNSNSQSNGAISIRGIA 97


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 93  NSYVRRNWNNQPQSSNTNDKSKGG 164
           NS+ RR    + Q S TN++S GG
Sbjct: 17  NSHFRRTVEEKSQLSGTNEESLGG 40


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +2

Query: 176 RARTHSLINTFITLHLQFYYQLIIHTKKSYMPSKSLFLS-LQIHYSLHYYKS-NIFRYNP 349
           R +T SL   FIT+H  F+ Q++     S+M S   FLS + ++  L + +S +    NP
Sbjct: 278 RMKTPSL---FITIHKIFWRQILGMGVSSFMVSVCQFLSPIALNRLLKHLESPSSSSVNP 334

Query: 350 FIDRVIL 370
            +  V+L
Sbjct: 335 LVWIVLL 341


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 408 FYCIVLIICCIVASITRSMNGLYLNM 331
           F   +L+I C+ AS+TR+  GL L+M
Sbjct: 335 FLLYLLVILCVGASVTRT--GLLLDM 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,952,684
Number of Sequences: 5004
Number of extensions: 37699
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)