BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308E11f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 27 2.2 SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 26 3.0 SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 25 5.2 SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 9.0 SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 25 9.0 >SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces pombe|chr 1|||Manual Length = 632 Score = 26.6 bits (56), Expect = 2.2 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = +3 Query: 276 KVFFYHYKYITAYIIINRTYS 338 K+F YH+ +I Y II+ +Y+ Sbjct: 2 KLFLYHFTFIVYYFIISFSYA 22 >SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces pombe|chr 3|||Manual Length = 183 Score = 26.2 bits (55), Expect = 3.0 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +3 Query: 120 NQPQSSNTNDKSKGGVHVRGPA 185 NQ + SN+N +S G + +RG A Sbjct: 76 NQTKPSNSNSQSNGAISIRGIA 97 >SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 593 Score = 25.4 bits (53), Expect = 5.2 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +3 Query: 93 NSYVRRNWNNQPQSSNTNDKSKGG 164 NS+ RR + Q S TN++S GG Sbjct: 17 NSHFRRTVEEKSQLSGTNEESLGG 40 >SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|Schizosaccharomyces pombe|chr 1|||Manual Length = 1469 Score = 24.6 bits (51), Expect = 9.0 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Frame = +2 Query: 176 RARTHSLINTFITLHLQFYYQLIIHTKKSYMPSKSLFLS-LQIHYSLHYYKS-NIFRYNP 349 R +T SL FIT+H F+ Q++ S+M S FLS + ++ L + +S + NP Sbjct: 278 RMKTPSL---FITIHKIFWRQILGMGVSSFMVSVCQFLSPIALNRLLKHLESPSSSSVNP 334 Query: 350 FIDRVIL 370 + V+L Sbjct: 335 LVWIVLL 341 >SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces pombe|chr 2|||Manual Length = 1050 Score = 24.6 bits (51), Expect = 9.0 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -3 Query: 408 FYCIVLIICCIVASITRSMNGLYLNM 331 F +L+I C+ AS+TR+ GL L+M Sbjct: 335 FLLYLLVILCVGASVTRT--GLLLDM 358 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,952,684 Number of Sequences: 5004 Number of extensions: 37699 Number of successful extensions: 112 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 109 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 112 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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