Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308E11f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0624 + 26676765-26676879,26676955-26677093,26678012-266780... 29 3.0
06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322 28 5.2
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 27 6.9
06_03_1445 - 30209354-30209396,30209798-30209875,30210220-302102... 27 6.9
03_05_1137 + 30652967-30653183,30653281-30653485,30653696-306537... 27 6.9
03_01_0052 - 450258-450285,450345-450457,450540-450746,451021-45... 27 6.9
11_06_0409 - 23217558-23218355,23218808-23219297,23219515-232195... 27 9.1
05_07_0090 - 27625611-27625787,27626181-27626204,27626727-276267... 27 9.1
>04_04_0624 +
26676765-26676879,26676955-26677093,26678012-26678083,
26678174-26678317,26678402-26678530,26678819-26678938,
26679015-26679076,26679937-26680170,26680259-26680485,
26680551-26680683,26680787-26680944,26681139-26681351,
26681482-26681730
Length = 664
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 361 CNTSDDTTNNKYNTIKNRQNTNE-SRVTGRQ 450
C ++DTTN N +N Q NE SRV G Q
Sbjct: 247 CFENNDTTNRPDNQCENSQKGNESSRVDGNQ 277
>06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322
Length = 665
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Frame = -3
Query: 438 DAGFVRVLSIFYC--------IVLIICCIVASITRSMNGLYLNMFDL 322
D + R + FYC IV+I+ + +I NG++++MF L
Sbjct: 60 DTHYPRYIMFFYCNAAAFALSIVVIVLIFILAILHEKNGIWISMFPL 106
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +2
Query: 158 GGRSRPRARTHSLINTFITLHLQFYYQLIIHTKKSYMPSKSLFL 289
GGRSR ++ SLI + L F +HT K+ M S + FL
Sbjct: 1027 GGRSRFGLQSTSLIIKYFVSPLFFTSPTQVHTAKATMSSCTAFL 1070
>06_03_1445 -
30209354-30209396,30209798-30209875,30210220-30210285,
30212275-30212322,30212408-30212571,30212726-30213581,
30213673-30213786,30213853-30213996,30214075-30214304,
30214584-30214724,30214810-30214887,30214972-30215053,
30215130-30215184,30215284-30215407,30215548-30215641,
30215718-30215794,30215873-30215982,30216058-30216655
Length = 1033
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 182 RTHSLINTFITLHLQFYYQLIIHTKKSYMPSKSLFLSLQ-IHYSLHY-YKSNIF 337
R + LI+TF+ + Q +HT K+ P + LF+ Q H+++ Y Y F
Sbjct: 333 RRYELIHTFLKDNPGQVTQFGLHTLKAATPDRKLFIFFQNEHFNVVYKYHGRFF 386
>03_05_1137 +
30652967-30653183,30653281-30653485,30653696-30653786,
30653904-30654046,30654186-30654429,30654536-30654640,
30654985-30655167,30655255-30655459,30655552-30656036
Length = 625
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +2
Query: 158 GGRSRPRARTHSLINT--FITLHLQFYYQLIIHTKKSYMPSKSLFLSLQIHYSLHY---Y 322
GG + +++I+T +T+H+ YY II + M S S + +++H + H +
Sbjct: 233 GGTVKGINENNTIIDTHGLLTIHMPPYYNSIIRGVSTVMVSYSSWNGVKMHANHHLITDF 292
Query: 323 KSNIFRYNPFI 355
N R+ F+
Sbjct: 293 LKNKLRFRGFV 303
>03_01_0052 -
450258-450285,450345-450457,450540-450746,451021-451080,
451281-451376,451495-451551,451786-451845,452774-452853,
454265-454367,454530-454571
Length = 281
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 171 RERPPLICHLCWKTEVDYS 115
RE P LICH+C+ +D++
Sbjct: 163 RELPLLICHICYTVGLDFT 181
>11_06_0409 -
23217558-23218355,23218808-23219297,23219515-23219591,
23219624-23219863,23220338-23220481,23220522-23220582,
23220875-23220934,23221097-23221192,23221306-23221398,
23221494-23221585
Length = 716
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +1
Query: 130 SLPTQMTNQRGAFTSAGPHSFTHKYIYNIAPSILLSVNY----THKKIVH 267
+L ++T+ + +FT G SFT + A SI +++Y HK I+H
Sbjct: 484 TLEDRLTDIKKSFTFRGKKSFTWRDRVTTAASICSALDYLHRNNHKPIIH 533
>05_07_0090 -
27625611-27625787,27626181-27626204,27626727-27626755,
27626967-27627028,27627735-27627876,27628681-27628910,
27629570-27629943
Length = 345
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +3
Query: 87 TNNSYVRRNWNNQPQSSNTND 149
+N + +R +WN QP++ N++D
Sbjct: 275 SNGNSLRDHWNRQPEAQNSDD 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,578,572
Number of Sequences: 37544
Number of extensions: 202287
Number of successful extensions: 416
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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