BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308E11f (521 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_0624 + 26676765-26676879,26676955-26677093,26678012-266780... 29 3.0 06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322 28 5.2 11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 27 6.9 06_03_1445 - 30209354-30209396,30209798-30209875,30210220-302102... 27 6.9 03_05_1137 + 30652967-30653183,30653281-30653485,30653696-306537... 27 6.9 03_01_0052 - 450258-450285,450345-450457,450540-450746,451021-45... 27 6.9 11_06_0409 - 23217558-23218355,23218808-23219297,23219515-232195... 27 9.1 05_07_0090 - 27625611-27625787,27626181-27626204,27626727-276267... 27 9.1 >04_04_0624 + 26676765-26676879,26676955-26677093,26678012-26678083, 26678174-26678317,26678402-26678530,26678819-26678938, 26679015-26679076,26679937-26680170,26680259-26680485, 26680551-26680683,26680787-26680944,26681139-26681351, 26681482-26681730 Length = 664 Score = 28.7 bits (61), Expect = 3.0 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Frame = +1 Query: 361 CNTSDDTTNNKYNTIKNRQNTNE-SRVTGRQ 450 C ++DTTN N +N Q NE SRV G Q Sbjct: 247 CFENNDTTNRPDNQCENSQKGNESSRVDGNQ 277 >06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322 Length = 665 Score = 27.9 bits (59), Expect = 5.2 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 8/47 (17%) Frame = -3 Query: 438 DAGFVRVLSIFYC--------IVLIICCIVASITRSMNGLYLNMFDL 322 D + R + FYC IV+I+ + +I NG++++MF L Sbjct: 60 DTHYPRYIMFFYCNAAAFALSIVVIVLIFILAILHEKNGIWISMFPL 106 >11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378, 2496476-2496577,2496853-2497003,2497173-2497222, 2497432-2497557,2497761-2497863,2498104-2498204, 2498540-2498677,2498768-2498911,2499028-2499103, 2499224-2499309,2499432-2499560,2500572-2500674, 2500776-2500843,2500912-2501013,2501432-2501527, 2501723-2501848,2502152-2502254,2502427-2502569, 2503017-2503154,2503248-2503391,2503535-2503610, 2503883-2503968,2504135-2504212,2505180-2505254, 2505362-2505496,2506240-2506272,2507886-2507905, 2508570-2508666,2508899-2509000,2510612-2510725 Length = 1126 Score = 27.5 bits (58), Expect = 6.9 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +2 Query: 158 GGRSRPRARTHSLINTFITLHLQFYYQLIIHTKKSYMPSKSLFL 289 GGRSR ++ SLI + L F +HT K+ M S + FL Sbjct: 1027 GGRSRFGLQSTSLIIKYFVSPLFFTSPTQVHTAKATMSSCTAFL 1070 >06_03_1445 - 30209354-30209396,30209798-30209875,30210220-30210285, 30212275-30212322,30212408-30212571,30212726-30213581, 30213673-30213786,30213853-30213996,30214075-30214304, 30214584-30214724,30214810-30214887,30214972-30215053, 30215130-30215184,30215284-30215407,30215548-30215641, 30215718-30215794,30215873-30215982,30216058-30216655 Length = 1033 Score = 27.5 bits (58), Expect = 6.9 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = +2 Query: 182 RTHSLINTFITLHLQFYYQLIIHTKKSYMPSKSLFLSLQ-IHYSLHY-YKSNIF 337 R + LI+TF+ + Q +HT K+ P + LF+ Q H+++ Y Y F Sbjct: 333 RRYELIHTFLKDNPGQVTQFGLHTLKAATPDRKLFIFFQNEHFNVVYKYHGRFF 386 >03_05_1137 + 30652967-30653183,30653281-30653485,30653696-30653786, 30653904-30654046,30654186-30654429,30654536-30654640, 30654985-30655167,30655255-30655459,30655552-30656036 Length = 625 Score = 27.5 bits (58), Expect = 6.9 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 5/71 (7%) Frame = +2 Query: 158 GGRSRPRARTHSLINT--FITLHLQFYYQLIIHTKKSYMPSKSLFLSLQIHYSLHY---Y 322 GG + +++I+T +T+H+ YY II + M S S + +++H + H + Sbjct: 233 GGTVKGINENNTIIDTHGLLTIHMPPYYNSIIRGVSTVMVSYSSWNGVKMHANHHLITDF 292 Query: 323 KSNIFRYNPFI 355 N R+ F+ Sbjct: 293 LKNKLRFRGFV 303 >03_01_0052 - 450258-450285,450345-450457,450540-450746,451021-451080, 451281-451376,451495-451551,451786-451845,452774-452853, 454265-454367,454530-454571 Length = 281 Score = 27.5 bits (58), Expect = 6.9 Identities = 9/19 (47%), Positives = 14/19 (73%) Frame = -3 Query: 171 RERPPLICHLCWKTEVDYS 115 RE P LICH+C+ +D++ Sbjct: 163 RELPLLICHICYTVGLDFT 181 >11_06_0409 - 23217558-23218355,23218808-23219297,23219515-23219591, 23219624-23219863,23220338-23220481,23220522-23220582, 23220875-23220934,23221097-23221192,23221306-23221398, 23221494-23221585 Length = 716 Score = 27.1 bits (57), Expect = 9.1 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%) Frame = +1 Query: 130 SLPTQMTNQRGAFTSAGPHSFTHKYIYNIAPSILLSVNY----THKKIVH 267 +L ++T+ + +FT G SFT + A SI +++Y HK I+H Sbjct: 484 TLEDRLTDIKKSFTFRGKKSFTWRDRVTTAASICSALDYLHRNNHKPIIH 533 >05_07_0090 - 27625611-27625787,27626181-27626204,27626727-27626755, 27626967-27627028,27627735-27627876,27628681-27628910, 27629570-27629943 Length = 345 Score = 27.1 bits (57), Expect = 9.1 Identities = 8/21 (38%), Positives = 16/21 (76%) Frame = +3 Query: 87 TNNSYVRRNWNNQPQSSNTND 149 +N + +R +WN QP++ N++D Sbjct: 275 SNGNSLRDHWNRQPEAQNSDD 295 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,578,572 Number of Sequences: 37544 Number of extensions: 202287 Number of successful extensions: 416 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 410 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 415 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1142636160 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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