Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308E11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14952| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.33 
SB_55731| Best HMM Match : DUF988 (HMM E-Value=7.2)                    29   3.1  
SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)     29   3.1  
SB_25169| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   7.1  
SB_46187| Best HMM Match : Phage_integrase (HMM E-Value=1)             27   7.1  
SB_27302| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_14952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 26/86 (30%), Positives = 39/86 (45%)
 Frame = +1

Query: 28  FIKKYNLTIYIYDFTFKLNQQITRTFVETGIINLSLPTQMTNQRGAFTSAGPHSFTHKYI 207
           F +KY  ++  Y FT K    +  T+  T     SL T    ++  + S   HSFT KY 
Sbjct: 12  FTRKYQYSLVTYSFTRKYQYSLV-TYSFTRKYQYSLVTYSFTRKYQY-SLVTHSFTRKYQ 69

Query: 208 YNIAPSILLSVNYTHKKIVHAVEKSF 285
           Y+     L++ ++T K     V  SF
Sbjct: 70  YS-----LVTYSFTRKYQYSLVTYSF 90



 Score = 31.9 bits (69), Expect = 0.33
 Identities = 22/86 (25%), Positives = 38/86 (44%)
 Frame = +1

Query: 28  FIKKYNLTIYIYDFTFKLNQQITRTFVETGIINLSLPTQMTNQRGAFTSAGPHSFTHKYI 207
           F +KY   +  Y FT K    +  T+  T     SL T    ++  + S   HSFT KY 
Sbjct: 259 FTRKYQYLLVTYSFTRKYQYSLV-TYSFTRKYQYSLVTYSFTKKYQY-SLVTHSFTRKYQ 316

Query: 208 YNIAPSILLSVNYTHKKIVHAVEKSF 285
           Y++  +   +  Y +  + ++  K +
Sbjct: 317 YSLV-TYSFTRKYQYSLVTYSFTKKY 341



 Score = 31.1 bits (67), Expect = 0.58
 Identities = 26/86 (30%), Positives = 39/86 (45%)
 Frame = +1

Query: 28  FIKKYNLTIYIYDFTFKLNQQITRTFVETGIINLSLPTQMTNQRGAFTSAGPHSFTHKYI 207
           F KKY  ++  + FT K    +  T+  T     SL T    ++  + S   HSFT KY 
Sbjct: 298 FTKKYQYSLVTHSFTRKYQYSLV-TYSFTRKYQYSLVTYSFTKKYQY-SLVTHSFTRKYQ 355

Query: 208 YNIAPSILLSVNYTHKKIVHAVEKSF 285
           Y+     L++ ++T K     V  SF
Sbjct: 356 YS-----LVTYSFTRKYQYSLVTYSF 376



 Score = 31.1 bits (67), Expect = 0.58
 Identities = 26/86 (30%), Positives = 39/86 (45%)
 Frame = +1

Query: 28  FIKKYNLTIYIYDFTFKLNQQITRTFVETGIINLSLPTQMTNQRGAFTSAGPHSFTHKYI 207
           F KKY  ++  + FT K    +  T+  T     SL T    ++  + S   HSFT KY 
Sbjct: 337 FTKKYQYSLVTHSFTRKYQYSLV-TYSFTRKYQYSLVTYSFTRKYQY-SLVTHSFTRKYQ 394

Query: 208 YNIAPSILLSVNYTHKKIVHAVEKSF 285
           Y+     L+  ++T K     V+ SF
Sbjct: 395 YS-----LVKYSFTKKYQYSLVKYSF 415


>SB_55731| Best HMM Match : DUF988 (HMM E-Value=7.2)
          Length = 140

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 197 INTFITLHLQFYYQLIIHTKKSY 265
           I+ FI +HLQ  Y+L++  K+SY
Sbjct: 118 IDRFIAVHLQNSYRLVVSKKRSY 140


>SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)
          Length = 480

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 284 FLSLQIHYSLHYYKSNIFRYNPFIDRVILA 373
           F + Q+ Y L YYK  +F  NP +DR+I A
Sbjct: 301 FSNEQVEYRLKYYKKFMFVRNP-LDRIISA 329


>SB_25169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 364 NTSDDTTNNKYNTIKNRQNTNES 432
           NTS++ +N K NT +NR NT  +
Sbjct: 7   NTSENQSNTKRNTSENRSNTRRN 29


>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1589

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 385 NNKYNTIKNRQNTNESRVTGRQCS 456
           NNK N+ +NR++  E RVT R  S
Sbjct: 352 NNKLNSCRNRESNPEPRVTPRLSS 375


>SB_46187| Best HMM Match : Phage_integrase (HMM E-Value=1)
          Length = 348

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 290 SLQIHYSLHYYKSNIFRYNP 349
           S+  HY L +YK N  RY P
Sbjct: 28  SMNSHYGLSFYKKNEHRYEP 47


>SB_27302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 385 NNKYNTIKNRQNTNESRVTGR 447
           NN  N+I NR NTN + +  R
Sbjct: 40  NNNNNSINNRNNTNNNSINNR 60



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 385 NNKYNTIKNRQNTNESRVTGR 447
           NN  N+I NR NTN + +  R
Sbjct: 63  NNNNNSINNRNNTNNNSINNR 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,162,400
Number of Sequences: 59808
Number of extensions: 268946
Number of successful extensions: 1640
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)