BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308E11f (521 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AY008258-1|AAG16637.1| 2035|Drosophila melanogaster ecdysone rec... 29 5.1 AE014134-1613|AAF52754.2| 2047|Drosophila melanogaster CG13109-P... 29 5.1 BT029915-1|ABM92789.1| 520|Drosophila melanogaster FI01025p pro... 28 6.7 BT003469-1|AAO39472.1| 523|Drosophila melanogaster RE70568p pro... 28 6.7 AE014134-3038|AAF53756.1| 440|Drosophila melanogaster CG10699-P... 28 6.7 AE014134-3037|AAF53758.2| 520|Drosophila melanogaster CG10699-P... 28 6.7 AB032181-1|BAA86717.1| 1990|Drosophila melanogaster plexus protein. 28 6.7 AE013599-3406|AAF46855.2| 1995|Drosophila melanogaster CG4444-PA... 28 8.8 >AY008258-1|AAG16637.1| 2035|Drosophila melanogaster ecdysone receptor co-activatorTaiman protein. Length = 2035 Score = 28.7 bits (61), Expect = 5.1 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 364 NTSDDTTNNKYNTIKNRQNTNESRVTGRQCS 456 N S TTNN N+ N NT++ + T +CS Sbjct: 308 NNSTTTTNNNTNS-NNNNNTSKPQATSTRCS 337 >AE014134-1613|AAF52754.2| 2047|Drosophila melanogaster CG13109-PA protein. Length = 2047 Score = 28.7 bits (61), Expect = 5.1 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 364 NTSDDTTNNKYNTIKNRQNTNESRVTGRQCS 456 N S TTNN N+ N NT++ + T +CS Sbjct: 308 NNSTTTTNNNTNS-NNNNNTSKPQATSTRCS 337 >BT029915-1|ABM92789.1| 520|Drosophila melanogaster FI01025p protein. Length = 520 Score = 28.3 bits (60), Expect = 6.7 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +3 Query: 84 STNNSYVRRNWNNQPQSSNTNDKSKGG 164 STN + N NN SS+ N+ S GG Sbjct: 474 STNTTSANNNANNNSSSSHNNNNSSGG 500 >BT003469-1|AAO39472.1| 523|Drosophila melanogaster RE70568p protein. Length = 523 Score = 28.3 bits (60), Expect = 6.7 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +3 Query: 84 STNNSYVRRNWNNQPQSSNTNDKSKGG 164 STN + N NN SS+ N+ S GG Sbjct: 477 STNTTSANNNANNNSSSSHNNNNSSGG 503 >AE014134-3038|AAF53756.1| 440|Drosophila melanogaster CG10699-PA, isoform A protein. Length = 440 Score = 28.3 bits (60), Expect = 6.7 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +3 Query: 84 STNNSYVRRNWNNQPQSSNTNDKSKGG 164 STN + N NN SS+ N+ S GG Sbjct: 394 STNTTSANNNANNNSSSSHNNNNSSGG 420 >AE014134-3037|AAF53758.2| 520|Drosophila melanogaster CG10699-PB, isoform B protein. Length = 520 Score = 28.3 bits (60), Expect = 6.7 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +3 Query: 84 STNNSYVRRNWNNQPQSSNTNDKSKGG 164 STN + N NN SS+ N+ S GG Sbjct: 474 STNTTSANNNANNNSSSSHNNNNSSGG 500 >AB032181-1|BAA86717.1| 1990|Drosophila melanogaster plexus protein. Length = 1990 Score = 28.3 bits (60), Expect = 6.7 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +1 Query: 328 EHIQIQPVH*PCNTSDDTTNNKYNTIKNRQNTNE 429 EH+ +H PC ++ TNN N N N NE Sbjct: 748 EHMNSHAMHFPCLKANAVTNNNNNN-NNTNNNNE 780 >AE013599-3406|AAF46855.2| 1995|Drosophila melanogaster CG4444-PA protein. Length = 1995 Score = 27.9 bits (59), Expect = 8.8 Identities = 11/35 (31%), Positives = 16/35 (45%) Frame = +1 Query: 328 EHIQIQPVH*PCNTSDDTTNNKYNTIKNRQNTNES 432 EH+ +H PC ++ TNN N N N + Sbjct: 748 EHMNSHAMHFPCLKANAVTNNNNNNNNTNNNNNNN 782 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,312,782 Number of Sequences: 53049 Number of extensions: 383574 Number of successful extensions: 1341 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1151 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1329 length of database: 24,988,368 effective HSP length: 80 effective length of database: 20,744,448 effective search space used: 1929233664 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -