Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308E11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-1|CAB05760.3|  371|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z75529-5|CAA99784.1|  610|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF273797-1|AAG15145.1|  323|Caenorhabditis elegans nuclear recep...    27   8.1  
AF101309-4|AAV58863.1|  669|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z83233-1|CAB05760.3|  371|Caenorhabditis elegans Hypothetical
           protein K06B4.1 protein.
          Length = 371

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 70  TFKLNQQITRTFVETGIINLSLPTQMTNQRGAFTSAGPHSF-THKYIY 210
           +FK  Q +T TFV+ G++      ++ N++    S+    F  +K+I+
Sbjct: 324 SFKFKQLVTDTFVDCGVVQKKSNVKILNEKPCADSSQDFIFHKNKFIH 371


>Z75529-5|CAA99784.1|  610|Caenorhabditis elegans Hypothetical
           protein C44H9.6 protein.
          Length = 610

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 121 INLSLPTQMTNQRGAFTSAGPHSFTHKYIYNIAPSI 228
           IN  +PT ++           HSF H Y+ NI  ++
Sbjct: 57  INALIPTNLSKGHRYTAQQNGHSFCHSYLQNITETM 92


>AF273797-1|AAG15145.1|  323|Caenorhabditis elegans nuclear receptor
           NHR-51 protein.
          Length = 323

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 70  TFKLNQQITRTFVETGIINLSLPTQMTNQRGAFTSAGPHSF-THKYIY 210
           +FK  Q +T TFV+ G++      ++ N++    S+    F  +K+I+
Sbjct: 276 SFKFKQLVTDTFVDCGVVQKKSNVKILNEKPCADSSQDFIFHKNKFIH 323


>AF101309-4|AAV58863.1|  669|Caenorhabditis elegans Hypothetical
           protein H24G06.1d protein.
          Length = 669

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 84  STNNSYVRRNWNNQPQSSNTND 149
           S+ N+  R  W + PQ SN ND
Sbjct: 39  SSTNTSGRMKWGDMPQQSNNND 60


>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
            protein H24G06.1b protein.
          Length = 1601

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 84   STNNSYVRRNWNNQPQSSNTND 149
            S+ N+  R  W + PQ SN ND
Sbjct: 971  SSTNTSGRMKWGDMPQQSNNND 992


>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
            protein H24G06.1a protein.
          Length = 1680

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 84   STNNSYVRRNWNNQPQSSNTND 149
            S+ N+  R  W + PQ SN ND
Sbjct: 971  SSTNTSGRMKWGDMPQQSNNND 992


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,725,566
Number of Sequences: 27780
Number of extensions: 210317
Number of successful extensions: 587
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)