BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308E11f (521 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z83233-1|CAB05760.3| 371|Caenorhabditis elegans Hypothetical pr... 27 8.1 Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical pr... 27 8.1 AF273797-1|AAG15145.1| 323|Caenorhabditis elegans nuclear recep... 27 8.1 AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical ... 27 8.1 AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 27 8.1 AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ... 27 8.1 >Z83233-1|CAB05760.3| 371|Caenorhabditis elegans Hypothetical protein K06B4.1 protein. Length = 371 Score = 27.1 bits (57), Expect = 8.1 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +1 Query: 70 TFKLNQQITRTFVETGIINLSLPTQMTNQRGAFTSAGPHSF-THKYIY 210 +FK Q +T TFV+ G++ ++ N++ S+ F +K+I+ Sbjct: 324 SFKFKQLVTDTFVDCGVVQKKSNVKILNEKPCADSSQDFIFHKNKFIH 371 >Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical protein C44H9.6 protein. Length = 610 Score = 27.1 bits (57), Expect = 8.1 Identities = 11/36 (30%), Positives = 17/36 (47%) Frame = +1 Query: 121 INLSLPTQMTNQRGAFTSAGPHSFTHKYIYNIAPSI 228 IN +PT ++ HSF H Y+ NI ++ Sbjct: 57 INALIPTNLSKGHRYTAQQNGHSFCHSYLQNITETM 92 >AF273797-1|AAG15145.1| 323|Caenorhabditis elegans nuclear receptor NHR-51 protein. Length = 323 Score = 27.1 bits (57), Expect = 8.1 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +1 Query: 70 TFKLNQQITRTFVETGIINLSLPTQMTNQRGAFTSAGPHSF-THKYIY 210 +FK Q +T TFV+ G++ ++ N++ S+ F +K+I+ Sbjct: 276 SFKFKQLVTDTFVDCGVVQKKSNVKILNEKPCADSSQDFIFHKNKFIH 323 >AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical protein H24G06.1d protein. Length = 669 Score = 27.1 bits (57), Expect = 8.1 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +3 Query: 84 STNNSYVRRNWNNQPQSSNTND 149 S+ N+ R W + PQ SN ND Sbjct: 39 SSTNTSGRMKWGDMPQQSNNND 60 >AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical protein H24G06.1b protein. Length = 1601 Score = 27.1 bits (57), Expect = 8.1 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +3 Query: 84 STNNSYVRRNWNNQPQSSNTND 149 S+ N+ R W + PQ SN ND Sbjct: 971 SSTNTSGRMKWGDMPQQSNNND 992 >AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical protein H24G06.1a protein. Length = 1680 Score = 27.1 bits (57), Expect = 8.1 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +3 Query: 84 STNNSYVRRNWNNQPQSSNTND 149 S+ N+ R W + PQ SN ND Sbjct: 971 SSTNTSGRMKWGDMPQQSNNND 992 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,725,566 Number of Sequences: 27780 Number of extensions: 210317 Number of successful extensions: 587 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 578 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 587 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1017709248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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