Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308E11f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17750.1 68417.m02650 heat shock factor protein 1 (HSF1) / he...    27   5.8  
At5g49730.1 68418.m06158 ferric reductase-like transmembrane com...    27   7.7  
At5g10820.1 68418.m01257 integral membrane transporter family pr...    27   7.7  

>At4g17750.1 68417.m02650 heat shock factor protein 1 (HSF1) / heat
           shock transcription factor 1 (HSTF1) identical to heat
           shock transcription factor 1 (HSF1) SP:P41151 from
           [Arabidopsis thaliana] ;contains Pfam profile: PF00447
           HSF-type DNA-binding domain
          Length = 495

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 328 EHIQIQPVH*PCNTSDDTTNNKYNTIKNRQNTNESRVTGR 447
           E++   PV     T ++  NN  N   N  N N +   GR
Sbjct: 438 EYMPESPVFGDATTLENNNNNNNNNNNNNNNNNNNNTNGR 477


>At5g49730.1 68418.m06158 ferric reductase-like transmembrane
           component family protein similar to ferric-chelate
           reductase (FRO1) [Pisum sativum] GI:15341529; contains
           Pfam profile PF01794: Ferric reductase like
           transmembrane componenent
          Length = 738

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 7   ITYLNIIFIKKYNLTIYIYDFTFKLNQQITRTFVETGII 123
           IT L+I +IK+YN+T + Y     +   +    +  G++
Sbjct: 583 ITLLDIFYIKRYNITTWWYKGLLFVGCMVASVLIFGGLV 621


>At5g10820.1 68418.m01257 integral membrane transporter family
           protein contains 11 transmembrane domains; similar to
           folate/methotrexate transporter FT1 (GI:5813863)
           {Leishmania donovani};
           lignostilbene-alpha,beta-dioxygenase gene, Synechococcus
           PCC7942, EMBL:AF055873
          Length = 503

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +1

Query: 16  LNIIFIKKYNLTIYIYDFTFKLNQQ 90
           L+++FIK++NLT+ I D  F + ++
Sbjct: 359 LDLVFIKRWNLTLGIPDSLFVITEE 383


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,622,600
Number of Sequences: 28952
Number of extensions: 176550
Number of successful extensions: 422
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)