BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308E11f (521 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g17750.1 68417.m02650 heat shock factor protein 1 (HSF1) / he... 27 5.8 At5g49730.1 68418.m06158 ferric reductase-like transmembrane com... 27 7.7 At5g10820.1 68418.m01257 integral membrane transporter family pr... 27 7.7 >At4g17750.1 68417.m02650 heat shock factor protein 1 (HSF1) / heat shock transcription factor 1 (HSTF1) identical to heat shock transcription factor 1 (HSF1) SP:P41151 from [Arabidopsis thaliana] ;contains Pfam profile: PF00447 HSF-type DNA-binding domain Length = 495 Score = 27.5 bits (58), Expect = 5.8 Identities = 12/40 (30%), Positives = 17/40 (42%) Frame = +1 Query: 328 EHIQIQPVH*PCNTSDDTTNNKYNTIKNRQNTNESRVTGR 447 E++ PV T ++ NN N N N N + GR Sbjct: 438 EYMPESPVFGDATTLENNNNNNNNNNNNNNNNNNNNTNGR 477 >At5g49730.1 68418.m06158 ferric reductase-like transmembrane component family protein similar to ferric-chelate reductase (FRO1) [Pisum sativum] GI:15341529; contains Pfam profile PF01794: Ferric reductase like transmembrane componenent Length = 738 Score = 27.1 bits (57), Expect = 7.7 Identities = 11/39 (28%), Positives = 21/39 (53%) Frame = +1 Query: 7 ITYLNIIFIKKYNLTIYIYDFTFKLNQQITRTFVETGII 123 IT L+I +IK+YN+T + Y + + + G++ Sbjct: 583 ITLLDIFYIKRYNITTWWYKGLLFVGCMVASVLIFGGLV 621 >At5g10820.1 68418.m01257 integral membrane transporter family protein contains 11 transmembrane domains; similar to folate/methotrexate transporter FT1 (GI:5813863) {Leishmania donovani}; lignostilbene-alpha,beta-dioxygenase gene, Synechococcus PCC7942, EMBL:AF055873 Length = 503 Score = 27.1 bits (57), Expect = 7.7 Identities = 10/25 (40%), Positives = 19/25 (76%) Frame = +1 Query: 16 LNIIFIKKYNLTIYIYDFTFKLNQQ 90 L+++FIK++NLT+ I D F + ++ Sbjct: 359 LDLVFIKRWNLTLGIPDSLFVITEE 383 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,622,600 Number of Sequences: 28952 Number of extensions: 176550 Number of successful extensions: 422 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 416 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 421 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 957410176 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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