BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308E09f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 125 2e-29 SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3 SB_57776| Best HMM Match : EB (HMM E-Value=2.9) 29 3.1 SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 27 7.1 SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 >SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 263 Score = 125 bits (302), Expect = 2e-29 Identities = 60/120 (50%), Positives = 74/120 (61%) Frame = +2 Query: 158 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 337 NPL EKRP+NF IG IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD Sbjct: 29 NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88 Query: 338 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXXXNTIRSGTNTVTKLVE 517 + + LFK+L KYRPET ++ G N +T LVE Sbjct: 89 RQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVE 148 >SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 227 Score = 29.1 bits (62), Expect = 2.3 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = +1 Query: 151 DRESSLREEAKELCYWSGHSANS*LVQ-ICKMAQVYPHPAPEGCTSASSESAPSDQPI 321 DR ++ E KE+CYW GH + + + + + + T+++SE S +P+ Sbjct: 137 DRRKNMEERHKEMCYW-GHKFETYVTKLVSERGKRETVMGASTSTASTSEGGASAKPV 193 >SB_57776| Best HMM Match : EB (HMM E-Value=2.9) Length = 669 Score = 28.7 bits (61), Expect = 3.1 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Frame = +1 Query: 151 DRESSLREEAKELCYWSGHSANS*LVQ-ICKMAQVYPHPAPEGCTSASSESAPSDQPI 321 DR ++ E KE+CYW GH + + + + + + T++ SE S +P+ Sbjct: 187 DRRKNMEERHKEMCYW-GHKFETYVTKLVSERGKRETVMGASTSTASKSEGGASAKPV 243 >SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 655 Score = 27.9 bits (59), Expect = 5.4 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = +1 Query: 280 TSASSESAPSDQPIYPDTG 336 T+ASSE+APS P PD G Sbjct: 43 TAASSEAAPSSAPSMPDYG 61 >SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 832 Score = 27.9 bits (59), Expect = 5.4 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = +2 Query: 227 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 376 SR RW Y R+ KA+LQR ++ I Q T + K +L K Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557 >SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) Length = 172 Score = 27.5 bits (58), Expect = 7.1 Identities = 16/54 (29%), Positives = 20/54 (37%) Frame = +2 Query: 356 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXXXNTIRSGTNTVTKLVE 517 LFK+L KYRPET ++ G N +T LVE Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVE 57 >SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1300 Score = 27.1 bits (57), Expect = 9.4 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = +1 Query: 274 GCTSASSESAPSDQPIYPDTGQDYS 348 GC ++ PS+ P YP T + YS Sbjct: 1229 GCRPSNDRVKPSEMPHYPKTTEKYS 1253 >SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 708 Score = 27.1 bits (57), Expect = 9.4 Identities = 15/35 (42%), Positives = 23/35 (65%) Frame = -2 Query: 376 FLQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSL 272 F+QNL L CS ++ G+LV+++ QTTL +L Sbjct: 28 FIQNLSLFL-CSFLKEHGQLVEKKVDLQTTLLEAL 61 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,725,694 Number of Sequences: 59808 Number of extensions: 237105 Number of successful extensions: 680 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 641 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 680 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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