Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308E09f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 133 6e-32
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 122 2e-28
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 120 5e-28
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 100 7e-22
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 27 8.1
U53148-3|AAB37077.1| 282|Caenorhabditis elegans Ground-like (gr... 27 8.1
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 133 bits (322), Expect = 6e-32
Identities = 62/120 (51%), Positives = 78/120 (65%)
Frame = +2
Query: 158 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 337
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 338 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXXXNTIRSGTNTVTKLVE 517
+A+ FK+L+KYRPE+ NT+R G NT+T+LVE
Sbjct: 90 SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 122 bits (293), Expect = 2e-28
Identities = 62/120 (51%), Positives = 78/120 (65%)
Frame = +2
Query: 158 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 337
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 338 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXXXNTIRSGTNTVTKLVE 517
+A+ FK+L+KYRPE+ NT+R G NT+T+LVE
Sbjct: 90 SQSARQAFKLLDKYRPES--------------------TEVTKRPNTVRHGVNTITRLVE 129
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 120 bits (290), Expect = 5e-28
Identities = 52/78 (66%), Positives = 65/78 (83%)
Frame = +2
Query: 158 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 337
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Query: 338 KTTAKGLFKILEKYRPET 391
+A+ FK+L+KYRPE+
Sbjct: 193 SHSARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 100 bits (239), Expect = 7e-22
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +2
Query: 158 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 337
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 306 LRSTNLPRHWTRLQLRA 356
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 247 QVYPHPAPE--GCTSASSESAPSDQPIYP 327
Q YP P P+ GCT + + P QP P
Sbjct: 161 QQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 247 QVYPHPAPE--GCTSASSESAPSDQPIYP 327
Q YP P P+ GCT + + P QP P
Sbjct: 161 QQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 247 QVYPHPAPE--GCTSASSESAPSDQPIYP 327
Q YP P P+ GCT + + P QP P
Sbjct: 161 QQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
>U53148-3|AAB37077.1| 282|Caenorhabditis elegans Ground-like (grd
related) protein10 protein.
Length = 282
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Frame = +1
Query: 235 CKMAQVYPHPAPEGCTSAS-------SESAPSDQPIYPDTGQDYS*GP 357
C P P P GC+ + +++ DQPIY T Q Y+ P
Sbjct: 35 CAPRPACPPPPPSGCSGSGVRAVARGAKTMTFDQPIYSPTPQSYAQPP 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,993,319
Number of Sequences: 27780
Number of extensions: 173753
Number of successful extensions: 527
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -