Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308E08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    40   2e-05
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    30   0.017
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   1.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.4  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
 Frame = +3

Query: 96  TPMYRAPEMLDTWDNRKIDHSVDMWALGCILYTLCYMQHPF--EDSAKL--AILNGNYNL 263
           TP Y +PE+L      K    VD+WA G ILY L     PF  ED  +L   I  G+Y+ 
Sbjct: 75  TPGYLSPEVLKKEPYGK---PVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKTGSYDY 131

Query: 264 -NPN-DQRYKCFHETISGCLTVNPADRMTITNVLE 362
            +P  D         I+  LTVNP+ R+T +  L+
Sbjct: 132 PSPEWDTVTPEAKNLINQMLTVNPSKRITASEALK 166


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 29.9 bits (64), Expect = 0.017
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 96  TPMYRAPEMLDTWDNRKIDHSVDMWALGCILYTLCYMQHPF 218
           TP Y APE++    N+  D S D W+LG +++ L     PF
Sbjct: 528 TPEYVAPEVIL---NKGHDISADYWSLGVLMFELLTGTPPF 565


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 234 LAILNGNYNLNPNDQRYKCFHETIS 308
           ++ L+ NYN N  +  YK  H  I+
Sbjct: 315 ISSLSNNYNYNNYNNNYKPLHYNIN 339


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 415 NLSVKKLNNLWPLARQVYSTFFGCPIVF 498
           N   +  NNL P A Q YST    P  +
Sbjct: 394 NFDFQNKNNLIPSALQSYSTSMRDPAFY 421


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 415 NLSVKKLNNLWPLARQVYSTFFGCPIVF 498
           N   +  NNL P A Q YST    P  +
Sbjct: 394 NFDFQNKNNLIPSALQSYSTSMRDPAFY 421


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 377 YRSQPLQHIGYRHP 336
           +++Q LQH+ YR P
Sbjct: 356 HQTQSLQHLHYRQP 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,975
Number of Sequences: 438
Number of extensions: 3631
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)