Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308E07f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   0.71 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   5.0  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    21   5.0  
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    21   8.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.7  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.2 bits (50), Expect = 0.71
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 286 APSAGAPATRALPHAATSLRAAR-PGALRP-KQHIPAVDRQ 402
           A  A APA RA   AA +  AAR  GA  P   H PA+ +Q
Sbjct: 273 AERAPAPAVRAAGDAAAARGAARADGAGGPLHDHRPALAQQ 313


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 352 RPGALRPKQHIPAVDRQT 405
           RP AL PK+ IP+  R +
Sbjct: 67  RPVALPPKREIPSPKRSS 84


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 489 NIHIEFLWS*DDGSRVLNTSRSHQLGVFCLTVHCWYVLFG 370
           N+  EFL     G+ V N  +  ++ VF + V   + LFG
Sbjct: 112 NLEPEFLKLDQLGATVRNNRQIRRMVVFLIGVSLSFNLFG 151


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 278 NEERHQLVHRLHGHCLTLQPHSGQLGLAPCDPNNTYQQ 391
           NE+  + V ++  H +  +P+  Q   A  DP   Y+Q
Sbjct: 76  NEKHKEGVRKVLHHLIKNKPNWWQELEAKFDPKGEYKQ 113


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -1

Query: 284 PRCSSTVRQPCRVCK 240
           P C   V +P R CK
Sbjct: 92  PTCDEPVHRPGRCCK 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,732
Number of Sequences: 336
Number of extensions: 2825
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)