Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308E07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 30 0.18
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe... 30 0.18
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 29 0.32
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.42
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 27 1.3
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 26 3.9
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 26 3.9
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 25 5.2
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 25 5.2
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb... 25 5.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 5.2
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 25 6.8
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 25 6.8
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 25 6.8
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 25 9.0
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac... 25 9.0
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 25 9.0
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 25 9.0
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 9.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 9.0
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom... 25 9.0
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 25 9.0
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 30.3 bits (65), Expect = 0.18
Identities = 29/124 (23%), Positives = 52/124 (41%)
Frame = +3
Query: 108 LRPISVRRRATGWATASCSG*MRPASSASASGAWRPTEIMLNRPFADSARLTDRGATTRS 287
++P + G T +G A++A+ + A TE+ +A T+ ATT +
Sbjct: 1168 VQPTTGATGTAGTETQVTTGTETQATTATETQATTATEVQTTTGATGTAG-TETQATTAT 1226
Query: 288 AISWCTGYTGTASRCNLTPGSSAWRPATQTTHTSSGPSNRKRPTGEIDSY*EHENRHLNS 467
+ TG TGTA ++ +P T T T +G + E + E + +
Sbjct: 1227 EVQPTTGATGTAGTETQVTTATEVQPTTGATGT-AGTETQVTTGTETQATTATETQATTA 1285
Query: 468 TKIQ 479
T++Q
Sbjct: 1286 TEVQ 1289
Score = 30.3 bits (65), Expect = 0.18
Identities = 29/124 (23%), Positives = 52/124 (41%)
Frame = +3
Query: 108 LRPISVRRRATGWATASCSG*MRPASSASASGAWRPTEIMLNRPFADSARLTDRGATTRS 287
++P + G T +G A++A+ + A TE+ +A T+ ATT +
Sbjct: 1250 VQPTTGATGTAGTETQVTTGTETQATTATETQATTATEVQTTTGATGTAG-TETQATTAT 1308
Query: 288 AISWCTGYTGTASRCNLTPGSSAWRPATQTTHTSSGPSNRKRPTGEIDSY*EHENRHLNS 467
+ TG TGTA ++ +P T T T +G + E + E + +
Sbjct: 1309 EVQPTTGATGTAGTETQVTTATEVQPTTGATGT-AGTETQVTTGTETQATTATETQATTA 1367
Query: 468 TKIQ 479
T++Q
Sbjct: 1368 TEVQ 1371
Score = 29.9 bits (64), Expect = 0.24
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 261 TDRGATTRSAISWCTGYTGTASRCNLTPGSSAWRPATQTTHTSS 392
T+ ATT + + TG TGTA ++ +P T T TSS
Sbjct: 1360 TETQATTATEVQTTTGATGTAGTETQVTTATEVQPTTAVTETSS 1403
>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 163
Score = 30.3 bits (65), Expect = 0.18
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 506 LR*XPQIFILNFCGVEMTVLVFSIRVDLTSWAFSV*RSTAGMCCL 372
+R P+ I C V + V++F V W+F + S AG+ CL
Sbjct: 108 IRLDPKYSIPGVCAVTLIVIMFLAPVGRLFWSFCIVSSFAGLHCL 152
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 29.5 bits (63), Expect = 0.32
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 358 GALRPKQHIPAVDRQTENAQLVRSTRIENTRTVISTPQKFN 480
G+LR H + +QTE +R+ +E RT S +FN
Sbjct: 218 GSLRNVTHSAGISKQTEMIVAIRAEDLERARTRPSRTDRFN 258
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 0.42
Identities = 22/103 (21%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Frame = +3
Query: 135 ATGWATASCSG*MRPASSASASGAWRPTEIMLNRPFADSARLTDRGATTRSAISWCTGYT 314
++ +++ S M +SS S+S + I + S+ + ++++S+ S+ + +
Sbjct: 314 SSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVS 373
Query: 315 GTASRCNLT---PGSSAWRPATQTTHTSSGPSNRKRPTGEIDS 434
++S + T SS+ RPA+ ++H+SS S++ + + S
Sbjct: 374 SSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSS 416
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 384 TSSGPSNRKRPTGEIDSY*EHENRHLNSTKIQYEY 488
+S G S PTG ID Y E +H K+ Y
Sbjct: 7 SSIGTSLTPSPTGSIDEYTSKEVKHPEDVKVDASY 41
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 69 KRLVPAWIQWGKPLRPISVRRRATG 143
KR V ++ GKP RP++V +R G
Sbjct: 25 KRPVSDYLWKGKPFRPLTVAKRKKG 49
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +2
Query: 272 SYNEERHQLVHRLHGHCLTLQPHSGQLGLAPCD---PNNTYQQWT 397
SY+ R Q +HRL + H +L ++P + PNN + T
Sbjct: 22 SYSSRRSQQIHRLSHSPMAEGFHKPKLNISPSESNLPNNVAENTT 66
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 243 QMACLTLSPSVSTHRSPTPSWP--ASFNLNNWLLPIPWHDD 127
Q A ++LS S + S P P A +LNN+ P+P + D
Sbjct: 189 QTAPISLSSEGSDYFSRPPPTPNVAGLSLNNFFCPLPENKD 229
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +1
Query: 334 TSLRAARPGALRPKQHIPAVDRQTENAQLVRSTRIENTRTVISTPQKFNMNI 489
TSLR++RP R + + R+ + T RT K+N +I
Sbjct: 520 TSLRSSRPSWTRSRSMASKLPREKMLVFVAGGTTFSELRTCYELSDKYNKDI 571
>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 269 WSYNEERHQLVHRLHGHCL 325
+SY ++RH L+H L CL
Sbjct: 197 FSYRKQRHTLIHDLPNTCL 215
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 318 TASRCNLTPGSSAWRPATQTTHTSSGPSNRK 410
TAS + + SS++ PA+ T+ T+S S+R+
Sbjct: 735 TASTSSGSSSSSSYTPASSTSTTTSSVSSRQ 765
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.0 bits (52), Expect = 6.8
Identities = 22/83 (26%), Positives = 38/83 (45%)
Frame = +3
Query: 177 PASSASASGAWRPTEIMLNRPFADSARLTDRGATTRSAISWCTGYTGTASRCNLTPGSSA 356
PASSASAS + E + R + ++ A + T + ++SR + +P +
Sbjct: 67 PASSASASPVKKSAEALAERSNSSMGTFDPPPRYSKIARARST-HVASSSR-HRSPSHND 124
Query: 357 WRPATQTTHTSSGPSNRKRPTGE 425
P+TQ++ S G R + E
Sbjct: 125 SSPSTQSSLKSRGSIRRYKSVRE 147
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 323 LTLQPHSGQLGLAPCDPNNTYQQWTVKQKT 412
L L P SG LA +NT + W VK +T
Sbjct: 231 LHLAPDSGPYLLASGSKDNTVRIWNVKLRT 260
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 451 FSCSQYESISPVGRFLFDGPLLVCVVWVAGRQAEL 347
FS +++SP+ F F G L++ W A L
Sbjct: 305 FSRQALKNLSPMLHFSFHGMLMIVTEWAAYEMTSL 339
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 273 ATTRSAISWCTGYTGTASRCNLTPGSSAWRPATQTTHTSS 392
A +RSA S Y+ T R +TP ++ +Q +SS
Sbjct: 334 ARSRSAYSTSANYSNTPPRNTVTPSTARSSTLSQNPSSSS 373
>SPAC16C9.02c |||S-methyl-5-thioadenosine
phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 96 WGKPLRPISVRRRATGWATA 155
WG P PIS+ R +G+ A
Sbjct: 36 WGYPASPISIARTTSGFLIA 55
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 43 RSLGDGEEQSDWCLLGYN-GESRSGLYRYV-VVPRD 144
RSL + +SDWC L + S S RY +VP D
Sbjct: 436 RSLAFNDSKSDWCCLASSRSTSISRKNRYTDIVPYD 471
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 41 NVHWGMVKNKATGACLDTMGKAAPAYIGTS 130
N WG +K T C +++G+ A GTS
Sbjct: 206 NYRWGSLKLLKTPLCAESIGEMGFAVGGTS 235
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 293 QLVHRLHGHCLTLQPHSGQLGLAP 364
QL HRL +CL L + + G AP
Sbjct: 19 QLGHRLDANCLVLGRYFSEQGSAP 42
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = +3
Query: 177 PASSAS---ASGAWRPTEIMLNRPFADSARLTDRGATTRSAISWCTGYTGTASRCNLTPG 347
P SSAS ++ PT + F ++ L +T + S +G+++ L+
Sbjct: 694 PTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTSSVSTPLSNSSAYPSSGSSTFSRLSST 753
Query: 348 SSAWRPATQTTHTSSGPSNRKRPTG 422
++ T+T ++SG + RPTG
Sbjct: 754 LTSSIIPTETFGSTSGSATGTRPTG 778
Score = 24.6 bits (51), Expect = 9.0
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Frame = +3
Query: 183 SSASASGAWRPTEIMLNRPFADSARLTDRGATT-------RSAISWCTGYT-GTASRCNL 338
++AS +G PT N P + T G T S S+ T GT + +
Sbjct: 828 TTASGTGGGNPTAAPTNEPTVTTGTETTEGTATYTEPTTFTSTFSFTTTIIGGTTTIIPV 887
Query: 339 TPGS-SAWRPATQTTHTSSGPSNRKRPT 419
PG+ S+ A TT + GP P+
Sbjct: 888 NPGNPSSSVSAPPTTSFTPGPGGSGYPS 915
>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 304
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 183 SSASASGAWRPTEIMLNRPFADSARL 260
SS+ S A R ++ +N PF D RL
Sbjct: 278 SSSGGSNAQRSEDLDVNNPFGDHNRL 303
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +2
Query: 161 FRLNEAGQLGVGERCVETDGDNVKQAICRLG 253
++L++ +L ++C + D N + A C LG
Sbjct: 3 YKLDQLTRLPENKKCFDCDAPNPQWASCNLG 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,144
Number of Sequences: 5004
Number of extensions: 46930
Number of successful extensions: 178
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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