Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308E07f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3923| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 3e-11
SB_7392| Best HMM Match : Ricin_B_lectin (HMM E-Value=4.6e-32) 62 3e-10
SB_13908| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_57435| Best HMM Match : Ricin_B_lectin (HMM E-Value=1.4e-22) 45 3e-05
SB_39788| Best HMM Match : Ricin_B_lectin (HMM E-Value=6.4e-14) 34 0.082
SB_44540| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_52289| Best HMM Match : SH3_1 (HMM E-Value=3.5e-13) 30 1.0
SB_42177| Best HMM Match : UBA (HMM E-Value=6.9) 30 1.0
SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25) 29 1.8
SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25) 29 1.8
SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_7479| Best HMM Match : Vinculin (HMM E-Value=0) 29 2.3
SB_2393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_19564| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_52097| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_45766| Best HMM Match : F5_F8_type_C (HMM E-Value=3.1e-27) 28 5.4
SB_36078| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-27) 28 5.4
SB_25636| Best HMM Match : UBA (HMM E-Value=6.9) 28 5.4
SB_24878| Best HMM Match : JTB (HMM E-Value=1.6) 28 5.4
SB_4458| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_11971| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_4210| Best HMM Match : JTB (HMM E-Value=5.8) 28 5.4
SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06) 27 7.1
SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_21212| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_44044| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_31340| Best HMM Match : DUF935 (HMM E-Value=0.19) 27 9.4
>SB_3923| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 65.3 bits (152), Expect = 3e-11
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
Frame = +2
Query: 23 FPKLPKNVHWGMVKNKATGACLDTMGKAAPAYIGTSSCHGMGNSQLFRLNEAGQLGVGER 202
FP VH G ++N T C+DTMG++ +G S CHG+G +QLF L GQL G+
Sbjct: 51 FPGGGSKVH-GEIRNPRTNLCVDTMGRSMTGVLGLSQCHGLGGNQLFFLTSEGQLRTGDD 109
Query: 203 CVETDGDNVKQAICRLGTVDGPWS--YNEERHQLVHRLHGHCLTLQPHSGQLGLAPCDPN 376
+ + + I +G D + + + + HR C+ + + + L+PC
Sbjct: 110 SHPLCAEALDREIMLMGCDDREENKQWKIKGKSIYHRSLRLCMDMNASANSVVLSPC-MR 168
Query: 377 NTYQQW 394
++ Q+W
Sbjct: 169 SSNQEW 174
>SB_7392| Best HMM Match : Ricin_B_lectin (HMM E-Value=4.6e-32)
Length = 594
Score = 62.1 bits (144), Expect = 3e-10
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Frame = +2
Query: 53 GMVKNKATGACLDTMGK-AAPAYIGTSSCHGMGNSQLFRLNEAGQLGVGERCVE-TDGD- 223
G ++N T CLDT+ K A G CHGMGN+Q F + ++ + C++ T D
Sbjct: 464 GEIRNLGTNTCLDTLAKNEAGGEPGMYMCHGMGNNQFFMYTKKHEMWHDDLCLDLTSSDQ 523
Query: 224 --NVKQAICRLGTVDGPWSYNEERHQLVHRLHGHCLTLQPHSGQLGLAPCDPNNTYQQW 394
VK C + W++ + + H LH C LQ +L + PCDPN + Q+W
Sbjct: 524 DTKVKVYTCHGMGGNQQWTHTKGGF-IKHSLHEAC--LQAQGDKLLVRPCDPNVSSQKW 579
>SB_13908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 629
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Frame = +2
Query: 53 GMVKNKATGACLDTMGKAAPAYIGTSSCHGMGNSQLFRLNEAGQ-LGVGERCVET----D 217
G ++NK + CLDT+G+ +G +CHGMG +Q F L ++ + L ++C+++
Sbjct: 471 GEIRNKESSLCLDTLGEKNIKRVGLYTCHGMGGNQFFTLTKSNEILFNDDKCLDSPNGDP 530
Query: 218 GDNVKQAICRLGTVDGPWSYNEERHQLVHRLHGH 319
G V+ C + W +N+ R + H
Sbjct: 531 GSYVEMITCHGLKGNQEWKHNKRMEHNRRREYKH 564
>SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1320
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +2
Query: 80 ACLDTMGKAAPAYIGTSSCHGMGNSQLFRLNEAGQLGVGERCVET-DGDNVKQAICRLGT 256
+CLDT+G A +G CHG +Q + L + + + C+ G V CR G
Sbjct: 1203 SCLDTLGSQAGGSVGMFDCHGQAGNQEWALTKKSTVRHLDLCLTLGSGGAVTLEGCRDGD 1262
Query: 257 VDGPWSYNEERHQLVHRLHGHCL 325
W +H L H+ G CL
Sbjct: 1263 PKQIWEQTSPQHTLRHKQSGLCL 1285
>SB_57435| Best HMM Match : Ricin_B_lectin (HMM E-Value=1.4e-22)
Length = 472
Score = 45.2 bits (102), Expect = 3e-05
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Frame = +2
Query: 68 KATGACLDTMGKAAPAYIGTSSCHGMGNSQLFRLNEAGQLGVGERCV-ETDG---DNVKQ 235
K C+DT+G IG CHG G +Q++ L ++ L C+ DG + V+
Sbjct: 353 KQGNQCVDTLGHMRGQTIGLFECHGAGGNQMWSLTKSSLLKHETMCLGVNDGKATEPVQL 412
Query: 236 AICRLGTVDGPWSYNEERHQLVHRLHGHCLTLQPH-SGQLGLAPCDPNNTYQQW 394
C W Y + +L H+ CL+ H + L L C+ + Q W
Sbjct: 413 LDCDENNSMQHWEYEKATSRLRHKPTSLCLSSDKHKTSGLTLEQCNGSAFSQHW 466
>SB_39788| Best HMM Match : Ricin_B_lectin (HMM E-Value=6.4e-14)
Length = 784
Score = 33.9 bits (74), Expect = 0.082
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Frame = +2
Query: 170 NEAGQLGVGERCVE----TDGDNVKQAICRLGTVDGPWSYNEERHQLVHRLHGHCLTLQP 337
N G + G+RCV+ T+G + C + W Y + +QL + L G CLT P
Sbjct: 611 NSKGDISQGDRCVDTMERTEGGFPELFACHQKGGNQEWEYTSD-NQLKNPLRGDCLTAPP 669
Query: 338 HSGQ--LGLAPCDPNNTYQQ 391
+ + + L C ++ Q+
Sbjct: 670 NKEKTIIELRQCSSDSPLQK 689
>SB_44540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +2
Query: 53 GMVKNKATGACLDTMGKAAP---AYIGTSSCHGMGNSQ 157
G V+N ++ CLD++G A P A +G +CHG G +Q
Sbjct: 284 GEVRNPSSNQCLDSLG-AKPEHNARVGIYTCHGQGGNQ 320
>SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 301 APATRALPHAATSLRAARPGALRPKQHIPAVD-RQTENA 414
AP R PH A R G P+QH P D R T++A
Sbjct: 9 APDNRDNPHRNQQTAATRTGTSNPRQHAPVPDNRATQHA 47
>SB_52289| Best HMM Match : SH3_1 (HMM E-Value=3.5e-13)
Length = 803
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 262 RTVELQRGAPSAGAPATRALPHAATSLRAARPGALRPKQHIPAVDRQTENAQL 420
+T L G+ + G P +L H+ ++ RPG P +PAV + ENA L
Sbjct: 290 KTSPLSGGSVNIGGPIPGSLTHSRDMVQVGRPGGRLPAA-LPAVPTE-ENADL 340
>SB_42177| Best HMM Match : UBA (HMM E-Value=6.9)
Length = 266
Score = 30.3 bits (65), Expect = 1.0
Identities = 34/114 (29%), Positives = 46/114 (40%)
Frame = +2
Query: 128 SSCHGMGNSQLFRLNEAGQLGVGERCVETDGDNVKQAICRLGTVDGPWSYNEERHQLVHR 307
S CHG+ S LG+ R +E D + V+ AI L +DGP S R + H
Sbjct: 95 SKCHGINISVRTLKRRLKDLGMSRRYLEYDPNTVRSAITEL--LDGPNSIVGYR-SVWHN 151
Query: 308 LHGHCLTLQPHSGQLGLAPCDPNNTYQQWTVKQKTPNW*DRLVLRTREPSSQLH 469
L + + Q L DPN + K K R V R+ P+S H
Sbjct: 152 LRMKGILVPRVVVQEMLKEIDPNGVELRKAHKLK------RRVYRSLGPNSTWH 199
>SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
Length = 431
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/76 (25%), Positives = 39/76 (51%)
Frame = +3
Query: 171 MRPASSASASGAWRPTEIMLNRPFADSARLTDRGATTRSAISWCTGYTGTASRCNLTPGS 350
+ P S SAS +W P + ++ A++ ++ + A++ C T +++ + +
Sbjct: 139 LTPLISQSAS-SWNPALLQDSKIPVSQAQIPEQKLCQQPAVT-CDSLTQSSNPLIKSQAT 196
Query: 351 SAWRPATQTTHTSSGP 398
A RP++Q +SSGP
Sbjct: 197 IAQRPSSQPQTSSSGP 212
>SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
Length = 669
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/76 (25%), Positives = 39/76 (51%)
Frame = +3
Query: 171 MRPASSASASGAWRPTEIMLNRPFADSARLTDRGATTRSAISWCTGYTGTASRCNLTPGS 350
+ P S SAS +W P + ++ A++ ++ + A++ C T +++ + +
Sbjct: 377 LTPLISQSAS-SWNPALLQDSKIPVSQAQIPEQKLCQQPAVT-CDSLTQSSNPLIKSQAT 434
Query: 351 SAWRPATQTTHTSSGP 398
A RP++Q +SSGP
Sbjct: 435 IAQRPSSQPQTSSSGP 450
>SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1907
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 319 LPHAATSLRAARPGALRPKQHIPAVDRQTENAQLVRSTRIENTRTVISTPQKFN 480
+PH+ R L+PK +P ENA + R+ +TR + +K N
Sbjct: 1135 VPHSLDDKEPFRVFRLKPKDPVPTYPFSFENATFLLRIRVSSTRKGENDDRKLN 1188
>SB_7479| Best HMM Match : Vinculin (HMM E-Value=0)
Length = 810
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +2
Query: 56 MVKNKATGACLDTMGKAAPAYIGTSSCH--GMGNSQLFRLNEAGQLGVGERCVETDGDNV 229
M K + D A ++ +CH G+G + + G++ +G ++D V
Sbjct: 274 MYDMKKAASVFDAKFDKAKEWVRDPTCHPGGLGEKAVRECIQQGRV-LGSMSQDSDRARV 332
Query: 230 KQAICRLGTVDGPWSYNEER 289
+Q L + G W Y+E R
Sbjct: 333 EQVCDDLDQLMGDWHYSEPR 352
>SB_2393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 28.7 bits (61), Expect = 3.1
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Frame = +2
Query: 134 CHGMGNSQLFRLNEAGQ-LGVGERCVETDGDNVKQAICRLGTVDGPWSYNEERHQ----- 295
C G S + EA + L G+RCV D+V+ I G D RHQ
Sbjct: 270 CGGSSGSAMVAAVEAAKSLNEGQRCVVILPDSVRNYIHSTGQGDREGDGIRYRHQGGSVE 329
Query: 296 LVHRLHGHCLTLQ 334
L H + GH +L+
Sbjct: 330 LHHPIRGHLTSLE 342
>SB_19564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 28.7 bits (61), Expect = 3.1
Identities = 24/77 (31%), Positives = 33/77 (42%)
Frame = +3
Query: 186 SASASGAWRPTEIMLNRPFADSARLTDRGATTRSAISWCTGYTGTASRCNLTPGSSAWRP 365
SASAS + P M++R A + + +G T R + + G R PGS +P
Sbjct: 321 SASASCSKSPVRPMVSRRIASAG--SSQGVTPRQSGTPTQG-AQPKRRSIAMPGSQVKKP 377
Query: 366 ATQTTHTSSGPSNRKRP 416
A TS G S P
Sbjct: 378 ARNCDETSVGSSEVSTP 394
>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +1
Query: 298 GAPATRALPHAATSLRAARPGALRPKQHIPAVDRQTENAQLVRSTRIENTRTVISTPQKF 477
G P T + H A A R G LRP+ +V+ + ++R + NTR +S+P+K
Sbjct: 882 GTPYTNSHVHHALKQFAIRAGTLRPE----SVEGFC--SSMIRHVVVTNTRG-LSSPEKN 934
Query: 478 NM-NI*GHQRKS 510
N+ + GH R++
Sbjct: 935 NLASKMGHSRRT 946
>SB_52097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 27.9 bits (59), Expect = 5.4
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +1
Query: 256 G*RTVELQRGAPSAGAPATRALPHAATSLRAARPGALRPKQHIPAVDRQTENAQLVRSTR 435
G +T ++ P A P T P +A A RP + P P + + A LV+
Sbjct: 383 GVQTPVVRFQGPVASGPVTVVRPSSANPQIAPRPAVIAPGPAPPRLIAPSTTATLVKKEP 442
Query: 436 IENT-RT-VISTP 468
+ T RT ++S P
Sbjct: 443 MPGTPRTLIVSNP 455
>SB_45766| Best HMM Match : F5_F8_type_C (HMM E-Value=3.1e-27)
Length = 255
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/81 (20%), Positives = 35/81 (43%)
Frame = +3
Query: 177 PASSASASGAWRPTEIMLNRPFADSARLTDRGATTRSAISWCTGYTGTASRCNLTPGSSA 356
P+S+++A GAW +++ + +G T + +W T Y + +L+ +
Sbjct: 147 PSSASNAHGAWLQVDLLSKYTI---CAVATQGGTDPAYDTWITQY-----KLSLSTDGAG 198
Query: 357 WRPATQTTHTSSGPSNRKRPT 419
W + P N+ +PT
Sbjct: 199 WEIYQENGADKVFPGNKDKPT 219
>SB_36078| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-27)
Length = 611
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/81 (20%), Positives = 35/81 (43%)
Frame = +3
Query: 177 PASSASASGAWRPTEIMLNRPFADSARLTDRGATTRSAISWCTGYTGTASRCNLTPGSSA 356
P+S+++A GAW +++ + +G T + +W T Y + +L+ +
Sbjct: 503 PSSASNAHGAWLQVDLLSKYTI---CAVATQGGTDPAYDTWITQY-----KLSLSTDGAG 554
Query: 357 WRPATQTTHTSSGPSNRKRPT 419
W + P N+ +PT
Sbjct: 555 WEIYQENGADKVFPGNKDKPT 575
>SB_25636| Best HMM Match : UBA (HMM E-Value=6.9)
Length = 205
Score = 27.9 bits (59), Expect = 5.4
Identities = 33/114 (28%), Positives = 45/114 (39%)
Frame = +2
Query: 128 SSCHGMGNSQLFRLNEAGQLGVGERCVETDGDNVKQAICRLGTVDGPWSYNEERHQLVHR 307
S CHG+ S G+ R +E D + V+ AI L +DGP S R + H
Sbjct: 32 SKCHGINISVRTLKRRLKDWGMSRRYLEYDPNTVRSAITEL--LDGPNSIVGYR-SVWHN 88
Query: 308 LHGHCLTLQPHSGQLGLAPCDPNNTYQQWTVKQKTPNW*DRLVLRTREPSSQLH 469
L + + Q L DPN + K K R V R+ P+S H
Sbjct: 89 LRMKGILVPRVVVQEMLKEIDPNGVELRKAHKLK------RRVYRSLGPNSTWH 136
>SB_24878| Best HMM Match : JTB (HMM E-Value=1.6)
Length = 603
Score = 27.9 bits (59), Expect = 5.4
Identities = 33/114 (28%), Positives = 45/114 (39%)
Frame = +2
Query: 128 SSCHGMGNSQLFRLNEAGQLGVGERCVETDGDNVKQAICRLGTVDGPWSYNEERHQLVHR 307
S CHG+ S G+ R +E D + V+ AI L +DGP S R + H
Sbjct: 300 SKCHGINISVRTLKRRLKDWGMSRRYLEYDPNTVRSAITEL--LDGPNSIVGYR-SVWHN 356
Query: 308 LHGHCLTLQPHSGQLGLAPCDPNNTYQQWTVKQKTPNW*DRLVLRTREPSSQLH 469
L + + Q L DPN + K K R V R+ P+S H
Sbjct: 357 LRMKGILVPRVVVQEMLKEIDPNGVELRKAHKLK------RRVYRSLGPNSTWH 404
>SB_4458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 27.9 bits (59), Expect = 5.4
Identities = 33/114 (28%), Positives = 45/114 (39%)
Frame = +2
Query: 128 SSCHGMGNSQLFRLNEAGQLGVGERCVETDGDNVKQAICRLGTVDGPWSYNEERHQLVHR 307
S CHG+ S G+ R +E D + V+ AI L +DGP S R + H
Sbjct: 32 SKCHGINISVRTLKRRLKDWGMSRRYLEYDPNTVRSAITEL--LDGPNSIVGYR-SVWHN 88
Query: 308 LHGHCLTLQPHSGQLGLAPCDPNNTYQQWTVKQKTPNW*DRLVLRTREPSSQLH 469
L + + Q L DPN + K K R V R+ P+S H
Sbjct: 89 LRMKGILVPRVVVQEMLKEIDPNGVELRKAHKLK------RRVYRSLGPNSTWH 136
>SB_11971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +3
Query: 297 WCTGYTGTASRCNLTPGSSAWRPATQTTHTSSGPSNRKRPTGEIDSY*EHENRHLNSTKI 476
W + + GT L PG+ W+ S + + G + Y H N HL+ T+I
Sbjct: 88 WESRFHGTRKTSALIPGNKKWKERKWNLEKSFSKTGEEDEFGVL--YEPHVNLHLDLTQI 145
>SB_4210| Best HMM Match : JTB (HMM E-Value=5.8)
Length = 427
Score = 27.9 bits (59), Expect = 5.4
Identities = 33/114 (28%), Positives = 45/114 (39%)
Frame = +2
Query: 128 SSCHGMGNSQLFRLNEAGQLGVGERCVETDGDNVKQAICRLGTVDGPWSYNEERHQLVHR 307
S CHG+ S G+ R +E D + V+ AI L +DGP S R + H
Sbjct: 234 SKCHGINISVRTLKRRLKDWGMSRRYLEYDPNTVRSAITEL--LDGPNSIVGYR-SVWHN 290
Query: 308 LHGHCLTLQPHSGQLGLAPCDPNNTYQQWTVKQKTPNW*DRLVLRTREPSSQLH 469
L + + Q L DPN + K K R V R+ P+S H
Sbjct: 291 LRMKGILVPRVVVQEILKEIDPNGVELRKAHKLK------RRVYRSLAPNSTWH 338
>SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06)
Length = 274
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = +3
Query: 249 SARLTDRGATTRSAISWCTGYTGTASRC----NLTPGSSAWRPATQTTHTSS 392
++ L +G TT ++ W G T S N T SS W TTH SS
Sbjct: 78 NSSLWTQGNTTHNSSLWTQGNTTHNSSLWTQGNTTHNSSLWTHRGNTTHNSS 129
>SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 27.5 bits (58), Expect = 7.1
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 176 AGQLGVGERCV-ETDGDNVKQAICRLGTVDGPWSYNEERHQLVHRLHGHCLTLQPHSGQL 352
+GQLGVG+ V E+D V I + ++ + ++ + +H LHG Q + Q
Sbjct: 377 SGQLGVGDNSVGESDTPMVVFVIAKDRSIC--LTAEQQTQKSLHGLHGRTGVTQLVTHQN 434
Query: 353 GLAPCDPNNTYQQWTVKQ 406
L + TY+Q+ V +
Sbjct: 435 QLYSTGRDGTYRQYKVHE 452
>SB_21212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -3
Query: 291 WRSSL*LHGPSTVPSLQMACLTLSPSVSTHRSPTPSWPASFNLNNWLLPIPWHDDVPI*A 112
WR+ L H VP AC ++S ++ P P P ++ N L+P P +D P+ A
Sbjct: 149 WRTPLMEH--PLVPGAT-ACTSISLKEGSYFYPEPQIPTWYSTRNSLVPSP-NDGYPVDA 204
Query: 111 GAAFP 97
P
Sbjct: 205 ETRDP 209
>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2653
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 258 LTDRG--ATTRSAISWCTGYTGTASRCNLTPGSSAWRPATQTTHTSSGPSNRKRPTGEID 431
L DRG A+ + S G G + ++PG+ + R + Q T +SG NR+ PT D
Sbjct: 2416 LNDRGGPASAKRQKSKLKGIKGKR-KGKISPGTVS-RDSAQRTSNASGSRNREEPTRNDD 2473
>SB_44044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +2
Query: 20 KFPKLPKNVHWGMVKNKATGACLDTMGKAAPAYIGTSSCHGMGNSQLFRLN 172
K LP G+V NK CL+T+ Y T H + Q+ RLN
Sbjct: 9 KHRNLPDENAVGLVLNKLL--CLNTVSTRIKRYHETPKVHSLTLGQIIRLN 57
>SB_31340| Best HMM Match : DUF935 (HMM E-Value=0.19)
Length = 339
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 128 SSCHGMGNSQLFRLNEAGQLGVGERCVETDGDNVKQAICRLGTVDGP 268
S CHG+ S G+ R +E D + V+ AI L +DGP
Sbjct: 32 SKCHGINISVRTLKRRLKDWGMSRRYLEYDPNTVRSAITEL--LDGP 76
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,543,713
Number of Sequences: 59808
Number of extensions: 383375
Number of successful extensions: 1349
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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