Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308E07f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF031841-1|AAC13677.1| 601|Caenorhabditis elegans GLY7 protein. 116 1e-26
AC006774-7|AAF60620.1| 601|Caenorhabditis elegans Glycosylation... 116 1e-26
AL110487-9|CAB54435.1| 626|Caenorhabditis elegans Hypothetical ... 66 1e-11
AF031836-1|AAC13672.1| 626|Caenorhabditis elegans GLY5b protein. 66 1e-11
AL110487-11|CAC42369.1| 624|Caenorhabditis elegans Hypothetical... 61 5e-10
AF031837-1|AAC13673.1| 624|Caenorhabditis elegans GLY5c protein. 61 5e-10
AL110487-10|CAC42368.1| 623|Caenorhabditis elegans Hypothetical... 58 4e-09
AF031835-1|AAC13671.1| 623|Caenorhabditis elegans GLY5a protein. 58 4e-09
L16621-14|AAA28224.3| 612|Caenorhabditis elegans Glycosylation ... 47 9e-06
AF031833-1|AAC13669.1| 612|Caenorhabditis elegans GLY3 protein. 47 9e-06
AL132943-7|CAC14394.1| 589|Caenorhabditis elegans Hypothetical ... 36 0.023
AF031834-1|AAC13670.1| 589|Caenorhabditis elegans GLY4 protein. 36 0.023
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 34 0.071
AL110501-9|CAB54507.2| 802|Caenorhabditis elegans Hypothetical ... 29 2.7
AL033514-40|CAD36501.1| 802|Caenorhabditis elegans Hypothetical... 29 2.7
AL023842-4|CAA19517.2| 229|Caenorhabditis elegans Hypothetical ... 29 2.7
AJ319870-1|CAC67459.1| 802|Caenorhabditis elegans ZYG-8 protein... 29 2.7
U39999-13|AAA81111.1| 320|Caenorhabditis elegans Hypothetical p... 28 3.5
U38377-3|AAA79748.1| 652|Caenorhabditis elegans Cohesin family ... 28 3.5
AL023821-1|CAA19438.2| 355|Caenorhabditis elegans Hypothetical ... 28 3.5
Z72509-4|CAA96648.3| 405|Caenorhabditis elegans Hypothetical pr... 28 4.7
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p... 28 4.7
Z74474-1|CAA98954.2| 566|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical pr... 27 8.1
U00046-3|AAC47045.2| 244|Caenorhabditis elegans Hypothetical pr... 27 8.1
AL132876-17|CAC48140.1| 934|Caenorhabditis elegans Hypothetical... 27 8.1
AF003130-3|AAB54123.1| 849|Caenorhabditis elegans Hypothetical ... 27 8.1
>AF031841-1|AAC13677.1| 601|Caenorhabditis elegans GLY7 protein.
Length = 601
Score = 116 bits (279), Expect = 1e-26
Identities = 53/135 (39%), Positives = 76/135 (56%)
Frame = +2
Query: 2 AYDVYDKFPKLPKNVHWGMVKNKATGACLDTMGKAAPAYIGTSSCHGMGNSQLFRLNEAG 181
AYDV +P LP N WG +N ATG CLD MG P +G + CHG G +QL RLN G
Sbjct: 463 AYDVLKSYPMLPPNDVWGEARNPATGKCLDRMG-GIPGPMGATGCHGYGGNQLIRLNVQG 521
Query: 182 QLGVGERCVETDGDNVKQAICRLGTVDGPWSYNEERHQLVHRLHGHCLTLQPHSGQLGLA 361
Q+ GE C+ +G ++ C GTV+G WSY+ + Q++H C+T+ ++ L
Sbjct: 522 QMAQGEWCLTANGIRIQANHCVKGTVNGFWSYDRKTKQIIHSQKRQCITVSESGSEVTLQ 581
Query: 362 PCDPNNTYQQWTVKQ 406
C +N Q++ K+
Sbjct: 582 TCTEDNERQKFVWKE 596
>AC006774-7|AAF60620.1| 601|Caenorhabditis elegans Glycosylation
related protein 7 protein.
Length = 601
Score = 116 bits (279), Expect = 1e-26
Identities = 53/135 (39%), Positives = 76/135 (56%)
Frame = +2
Query: 2 AYDVYDKFPKLPKNVHWGMVKNKATGACLDTMGKAAPAYIGTSSCHGMGNSQLFRLNEAG 181
AYDV +P LP N WG +N ATG CLD MG P +G + CHG G +QL RLN G
Sbjct: 463 AYDVLKSYPMLPPNDVWGEARNPATGKCLDRMG-GIPGPMGATGCHGYGGNQLIRLNVQG 521
Query: 182 QLGVGERCVETDGDNVKQAICRLGTVDGPWSYNEERHQLVHRLHGHCLTLQPHSGQLGLA 361
Q+ GE C+ +G ++ C GTV+G WSY+ + Q++H C+T+ ++ L
Sbjct: 522 QMAQGEWCLTANGIRIQANHCVKGTVNGFWSYDRKTKQIIHSQKRQCITVSESGSEVTLQ 581
Query: 362 PCDPNNTYQQWTVKQ 406
C +N Q++ K+
Sbjct: 582 TCTEDNERQKFVWKE 596
>AL110487-9|CAB54435.1| 626|Caenorhabditis elegans Hypothetical
protein Y39E4B.12a protein.
Length = 626
Score = 66.1 bits (154), Expect = 1e-11
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 4/127 (3%)
Frame = +2
Query: 38 KNVHWGMVKNKAT--GACLDTM-GKAAPAY-IGTSSCHGMGNSQLFRLNEAGQLGVGERC 205
++V G V+N A CLD M G+ +GT CHG G +Q + L++ G++ E C
Sbjct: 485 ESVAKGEVRNSAVQPARCLDCMVGRHEKNRPVGTYQCHGQGGNQYWMLSKDGEIRRDESC 544
Query: 206 VETDGDNVKQAICRLGTVDGPWSYNEERHQLVHRLHGHCLTLQPHSGQLGLAPCDPNNTY 385
V+ G +V C + W YN + +L H + CL + +L + C ++ Y
Sbjct: 545 VDYAGSDVMVFPCHGMKGNQEWRYNHDTGRLQHAVSQKCLGMTKDGAKLEMVACQYDDPY 604
Query: 386 QQWTVKQ 406
Q W K+
Sbjct: 605 QHWKFKE 611
>AF031836-1|AAC13672.1| 626|Caenorhabditis elegans GLY5b protein.
Length = 626
Score = 66.1 bits (154), Expect = 1e-11
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 4/127 (3%)
Frame = +2
Query: 38 KNVHWGMVKNKAT--GACLDTM-GKAAPAY-IGTSSCHGMGNSQLFRLNEAGQLGVGERC 205
++V G V+N A CLD M G+ +GT CHG G +Q + L++ G++ E C
Sbjct: 485 ESVAKGEVRNSAVQPARCLDCMVGRHEKNRPVGTYQCHGQGGNQYWMLSKDGEIRRDESC 544
Query: 206 VETDGDNVKQAICRLGTVDGPWSYNEERHQLVHRLHGHCLTLQPHSGQLGLAPCDPNNTY 385
V+ G +V C + W YN + +L H + CL + +L + C ++ Y
Sbjct: 545 VDYAGSDVMVFPCHGMKGNQEWRYNHDTGRLQHAVSQKCLGMTKDGAKLEMVACQYDDPY 604
Query: 386 QQWTVKQ 406
Q W K+
Sbjct: 605 QHWKFKE 611
>AL110487-11|CAC42369.1| 624|Caenorhabditis elegans Hypothetical
protein Y39E4B.12c protein.
Length = 624
Score = 60.9 bits (141), Expect = 5e-10
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Frame = +2
Query: 38 KNVHWGMVKNKATGACLDT-MGKAAP-AYIGTSSCHGMGNSQLFRLNEAGQLGVGERCVE 211
++V G ++N T CLD+ +G+ I CH G +Q + L++ G++ E CV+
Sbjct: 485 ESVAKGELRNAQTSQCLDSAVGEEVENKAITPYPCHEQGGNQYWMLSKDGEIRRDESCVD 544
Query: 212 TDGDNVKQAICRLGTVDGPWSYNEERHQLVHRLHGHCLTLQPHSGQLGLAPCDPNNTYQQ 391
G +V C + W YN + +L H + CL + +L + C ++ YQ
Sbjct: 545 YAGSDVMVFPCHGMKGNQEWRYNHDTGRLQHAVSQKCLGMTKDGAKLEMVACQYDDPYQH 604
Query: 392 WTVKQ 406
W K+
Sbjct: 605 WKFKE 609
>AF031837-1|AAC13673.1| 624|Caenorhabditis elegans GLY5c protein.
Length = 624
Score = 60.9 bits (141), Expect = 5e-10
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Frame = +2
Query: 38 KNVHWGMVKNKATGACLDT-MGKAAP-AYIGTSSCHGMGNSQLFRLNEAGQLGVGERCVE 211
++V G ++N T CLD+ +G+ I CH G +Q + L++ G++ E CV+
Sbjct: 485 ESVAKGELRNAQTSQCLDSAVGEEVENKAITPYPCHEQGGNQYWMLSKDGEIRRDESCVD 544
Query: 212 TDGDNVKQAICRLGTVDGPWSYNEERHQLVHRLHGHCLTLQPHSGQLGLAPCDPNNTYQQ 391
G +V C + W YN + +L H + CL + +L + C ++ YQ
Sbjct: 545 YAGSDVMVFPCHGMKGNQEWRYNHDTGRLQHAVSQKCLGMTKDGAKLEMVACQYDDPYQH 604
Query: 392 WTVKQ 406
W K+
Sbjct: 605 WKFKE 609
>AL110487-10|CAC42368.1| 623|Caenorhabditis elegans Hypothetical
protein Y39E4B.12b protein.
Length = 623
Score = 58.0 bits (134), Expect = 4e-09
Identities = 26/96 (27%), Positives = 45/96 (46%)
Frame = +2
Query: 119 IGTSSCHGMGNSQLFRLNEAGQLGVGERCVETDGDNVKQAICRLGTVDGPWSYNEERHQL 298
+G CH G +Q + L++ G++ E CV+ G +V C + W YN + +L
Sbjct: 513 VGMYQCHNQGGNQYWMLSKDGEIRRDESCVDYAGSDVMVFPCHGMKGNQEWRYNHDTGRL 572
Query: 299 VHRLHGHCLTLQPHSGQLGLAPCDPNNTYQQWTVKQ 406
H + CL + +L + C ++ YQ W K+
Sbjct: 573 QHAVSQKCLGMTKDGAKLEMVACQYDDPYQHWKFKE 608
>AF031835-1|AAC13671.1| 623|Caenorhabditis elegans GLY5a protein.
Length = 623
Score = 58.0 bits (134), Expect = 4e-09
Identities = 26/96 (27%), Positives = 45/96 (46%)
Frame = +2
Query: 119 IGTSSCHGMGNSQLFRLNEAGQLGVGERCVETDGDNVKQAICRLGTVDGPWSYNEERHQL 298
+G CH G +Q + L++ G++ E CV+ G +V C + W YN + +L
Sbjct: 513 VGMYQCHNQGGNQYWMLSKDGEIRRDESCVDYAGSDVMVFPCHGMKGNQEWRYNHDTGRL 572
Query: 299 VHRLHGHCLTLQPHSGQLGLAPCDPNNTYQQWTVKQ 406
H + CL + +L + C ++ YQ W K+
Sbjct: 573 QHAVSQKCLGMTKDGAKLEMVACQYDDPYQHWKFKE 608
>L16621-14|AAA28224.3| 612|Caenorhabditis elegans Glycosylation
related protein 3 protein.
Length = 612
Score = 46.8 bits (106), Expect = 9e-06
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Frame = +2
Query: 8 DVYDKFPKLPKNVH-WGMVKNKATGACLDTMGKAAPAYIGTSSCHGMGNSQLFRLNEAGQ 184
++Y + P LP + G + N+ T C+DT GK G +CHG G +Q + L G+
Sbjct: 471 NIYPEAP-LPADFRSLGAIVNRFTEKCVDTNGKKDGQAPGIQACHGAGGNQAWSLTGKGE 529
Query: 185 LGVGERCVETD-----GDNVKQAICRLG--TVDGPWSYNEERHQLVHRLHGHCLT 328
+ + C+ + G +K C + V + ++++ L+H+ G C+T
Sbjct: 530 IRSDDLCLSSGHVYQIGSELKLERCSVSKINVKHVFVFDDQAGTLLHKKTGKCVT 584
>AF031833-1|AAC13669.1| 612|Caenorhabditis elegans GLY3 protein.
Length = 612
Score = 46.8 bits (106), Expect = 9e-06
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Frame = +2
Query: 8 DVYDKFPKLPKNVH-WGMVKNKATGACLDTMGKAAPAYIGTSSCHGMGNSQLFRLNEAGQ 184
++Y + P LP + G + N+ T C+DT GK G +CHG G +Q + L G+
Sbjct: 471 NIYPEAP-LPADFRSLGAIVNRFTEKCVDTNGKKDGQAPGIQACHGAGGNQAWSLTGKGE 529
Query: 185 LGVGERCVETD-----GDNVKQAICRLG--TVDGPWSYNEERHQLVHRLHGHCLT 328
+ + C+ + G +K C + V + ++++ L+H+ G C+T
Sbjct: 530 IRSDDLCLSSGHVYQIGSELKLERCSVSKINVKHVFVFDDQAGTLLHKKTGKCVT 584
>AL132943-7|CAC14394.1| 589|Caenorhabditis elegans Hypothetical
protein Y116F11B.12a protein.
Length = 589
Score = 35.5 bits (78), Expect = 0.023
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 7/136 (5%)
Frame = +2
Query: 8 DVYDKFPKLPKNVHWGMVKNKATGACLDTMGKAAPAYIGTSSCHGMGNSQLF---RLNEA 178
+VY + ++P+ + K CLD+M + G CHG G +Q + +L +
Sbjct: 447 NVYPQL-EIPRKTPGKSFQMKIGNLCLDSMARKESEAPGLFGCHGTGGNQEWVFDQLTKT 505
Query: 179 GQLGVGERCVETDGDNVKQAICRLGTVD-GPWSYNEERHQLVHRLHGHCLTLQPHSGQLG 355
+ + + C++ + + + + + P + E++ + + G CLT+ SG
Sbjct: 506 FKNAISQLCLDFSSNTENKTVTMVKCENLRPDTMVVEKNGWLTQ-GGKCLTVNQGSGGDW 564
Query: 356 L---APCDPNNTYQQW 394
L A C+ NN Q+W
Sbjct: 565 LIYGAHCELNNGAQRW 580
>AF031834-1|AAC13670.1| 589|Caenorhabditis elegans GLY4 protein.
Length = 589
Score = 35.5 bits (78), Expect = 0.023
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 7/136 (5%)
Frame = +2
Query: 8 DVYDKFPKLPKNVHWGMVKNKATGACLDTMGKAAPAYIGTSSCHGMGNSQLF---RLNEA 178
+VY + ++P+ + K CLD+M + G CHG G +Q + +L +
Sbjct: 447 NVYPQL-EIPRKTPGKSFQMKIGNLCLDSMARKESEAPGLFGCHGTGGNQEWVFDQLTKT 505
Query: 179 GQLGVGERCVETDGDNVKQAICRLGTVD-GPWSYNEERHQLVHRLHGHCLTLQPHSGQLG 355
+ + + C++ + + + + + P + E++ + + G CLT+ SG
Sbjct: 506 FKNAISQLCLDFSSNTENKTVTMVKCENLRPDTMVVEKNGWLTQ-GGKCLTVNQGSGGDW 564
Query: 356 L---APCDPNNTYQQW 394
L A C+ NN Q+W
Sbjct: 565 LIYGAHCELNNGAQRW 580
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 33.9 bits (74), Expect = 0.071
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Frame = +3
Query: 99 GKPLRPISVRRRATGWATASCSG*MRPASSASASGAWRPTEIMLNRPFADSARLTDRGAT 278
G + S +G +T+S S + +++SG + T S +++R +
Sbjct: 460 GSTISTTSSASTTSGPSTSSGSTVSTTSGQSTSSGTTKSTTSGPTTSSGPST-VSERTLS 518
Query: 279 TRSAISWCTGYTGTA-SRCNLTPGSSAWRPATQTT----HTSSGPSNRKRPT 419
T S S +G + T+ S + TPG+S +TQ+T TSSGPS R T
Sbjct: 519 TTSGPSTTSGPSTTSGSTVSTTPGASTTSGSTQSTTSGPSTSSGPSTASRST 570
>AL110501-9|CAB54507.2| 802|Caenorhabditis elegans Hypothetical
protein Y79H2A.11 protein.
Length = 802
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = -2
Query: 277 VAPRSVNRAESANGLFNIISVGLHAPLADAELAGLIQPEQLAVAHPVA---RRRTDIGRS 107
V P ++++ N N + + + E G ++LA + + +RR IG S
Sbjct: 144 VFPTAISQGSMPNSGTNTAEASMTSSVCAMETEGT-NGDELAESRDMVSEMQRRCRIGPS 202
Query: 106 GFPHCIQAGTSRF 68
G+PH ++A RF
Sbjct: 203 GYPHLLKAKRLRF 215
>AL033514-40|CAD36501.1| 802|Caenorhabditis elegans Hypothetical
protein Y79H2A.11 protein.
Length = 802
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = -2
Query: 277 VAPRSVNRAESANGLFNIISVGLHAPLADAELAGLIQPEQLAVAHPVA---RRRTDIGRS 107
V P ++++ N N + + + E G ++LA + + +RR IG S
Sbjct: 144 VFPTAISQGSMPNSGTNTAEASMTSSVCAMETEGT-NGDELAESRDMVSEMQRRCRIGPS 202
Query: 106 GFPHCIQAGTSRF 68
G+PH ++A RF
Sbjct: 203 GYPHLLKAKRLRF 215
>AL023842-4|CAA19517.2| 229|Caenorhabditis elegans Hypothetical
protein Y44A6D.3 protein.
Length = 229
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +3
Query: 237 PFADSARLTDRGATTRSAISWCTGYTGTASRCNLTPGSSAWRPATQTTHTSSGPSNRKRP 416
PF + + + +IS + GT S +++ SS P+T TSSG S R++P
Sbjct: 147 PFLQAHQHQQQAQAKPDSISTASSVVGTPS--SISSSSSTPPPSTSPVPTSSG-SGRRKP 203
Query: 417 TGEIDSY*EHENRHLNSTKIQ 479
+ N +N +IQ
Sbjct: 204 RCPMKIVVAESNNPVNIEEIQ 224
>AJ319870-1|CAC67459.1| 802|Caenorhabditis elegans ZYG-8 protein
protein.
Length = 802
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = -2
Query: 277 VAPRSVNRAESANGLFNIISVGLHAPLADAELAGLIQPEQLAVAHPVA---RRRTDIGRS 107
V P ++++ N N + + + E G ++LA + + +RR IG S
Sbjct: 144 VFPTAISQGSMPNSGTNTAEASMTSSVCAMETEGT-NGDELAESRDMVSEMQRRCRIGPS 202
Query: 106 GFPHCIQAGTSRF 68
G+PH ++A RF
Sbjct: 203 GYPHLLKAKRLRF 215
>U39999-13|AAA81111.1| 320|Caenorhabditis elegans Hypothetical
protein F41G3.2 protein.
Length = 320
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 169 QPEQLAVAH-PVARRRTDIGRSGFPHCIQAGTSRFV 65
Q E V H P+ RRRT +GR+ H ++ S+F+
Sbjct: 190 QTETFFVRHQPLLRRRTPVGRNQLRHSRRSRPSQFI 225
>U38377-3|AAA79748.1| 652|Caenorhabditis elegans Cohesin family
protein 1 protein.
Length = 652
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/63 (25%), Positives = 26/63 (41%)
Frame = +1
Query: 295 AGAPATRALPHAATSLRAARPGALRPKQHIPAVDRQTENAQLVRSTRIENTRTVISTPQK 474
A +PA P ATS+ A + A R + Q +R R+++ + + K
Sbjct: 337 APSPAPSIAPSVATSVSAMEHDTIESYYERQAQKRAMQKEQNMRKRRVDDVKMITGEEMK 396
Query: 475 FNM 483
NM
Sbjct: 397 GNM 399
>AL023821-1|CAA19438.2| 355|Caenorhabditis elegans Hypothetical
protein Y102A5B.2 protein.
Length = 355
Score = 28.3 bits (60), Expect = 3.5
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +3
Query: 201 GAWRPTEIMLNRPFADSARLTDRGATTRSAISWCTGYTGTASRCNLT---PGSSAWRPAT 371
GA R T I L++PF ++ +T T + S+ T TG+ + N T P S++ PA
Sbjct: 30 GAVRLTYI-LSKPFCETDTITSSAIQTSTVSSFATTSTGSDTSSNSTTTRPLSTSTEPAP 88
Query: 372 QTT 380
T
Sbjct: 89 PFT 91
>Z72509-4|CAA96648.3| 405|Caenorhabditis elegans Hypothetical
protein F32G8.4 protein.
Length = 405
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +1
Query: 271 ELQRGAPSAGAPATRALPHAATSLRAARPGALRPKQHIPAVDRQTENAQLVRSTRIE 441
EL PS GAP A+PH S + + PK H+ +L++ +E
Sbjct: 312 ELSDQLPSIGAPMVPAVPHTRASFKIQ---DVIPKSHLAGFKLSEAEMKLIKPEDLE 365
>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
protein R11G1.1 protein.
Length = 1656
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 258 TVPSLQMACLTLSPSVSTHRSPTPSWPASFNLNNWLLPI 142
T+PS+ +P + R P A LNNW +PI
Sbjct: 291 TIPSISQTQFPQAPLIFPGRPDLPPITAPSPLNNWPIPI 329
>Z74474-1|CAA98954.2| 566|Caenorhabditis elegans Hypothetical
protein K10C8.1 protein.
Length = 566
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 260 DGPWSYNEERHQLVHRLHG-HCLTLQPHSGQLGLAPCDPNNTYQQWTVKQKTPNW 421
D WS N++ L G + + S LAP D ++ ++WT +Q+ W
Sbjct: 480 DIEWSKNKKELFLATNSPGSYAFLCEKFSNDSSLAPLDELDSGKKWTFEQRQTAW 534
>Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical protein
C16C10.3 protein.
Length = 1032
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 260 DGPWSYNEERHQLVHRLHGHCLTLQPHS 343
D WS NE H R GH ++ QP S
Sbjct: 930 DAKWSKNELMHLTYFRAFGHQVSYQPPS 957
>U00046-3|AAC47045.2| 244|Caenorhabditis elegans Hypothetical
protein R13F6.5 protein.
Length = 244
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +2
Query: 206 VETDGDNVKQAICRLGTVDGP--WSYNEERHQLVHRLHGHCLTLQ--PHSG 346
VE +K+ +C+L P W + + VHR+ HC LQ HSG
Sbjct: 72 VEHCDKEIKEDVCQLCNYRKPPRWHHCRRCNLCVHRMDHHCPILQLCIHSG 122
>AL132876-17|CAC48140.1| 934|Caenorhabditis elegans Hypothetical
protein Y105E8A.21 protein.
Length = 934
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 342 PGSSAWRPATQTTHTSSGPSNRKRPTG 422
PGSS + TT ++ P+ RKR TG
Sbjct: 293 PGSSVPSTSEPTTSAAAAPTKRKRVTG 319
>AF003130-3|AAB54123.1| 849|Caenorhabditis elegans Hypothetical
protein F55A12.5 protein.
Length = 849
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +1
Query: 325 HAATSLRAARPGALRPKQHIPAVDRQTENAQLVRSTRIENTRTVISTPQ 471
H + L P L PK P D QTE V S+ + TV TP+
Sbjct: 608 HEKSILAQKTPEKLAPKVATPMKDAQTETDDAVLSSGESSVVTVKYTPK 656
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,588,363
Number of Sequences: 27780
Number of extensions: 281906
Number of successful extensions: 972
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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