Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308E07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    28   0.051
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.62 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.62 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   1.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.5  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   3.3  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   3.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   3.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   5.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   5.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   5.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.7  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 28.3 bits (60), Expect = 0.051
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -3

Query: 273  LHGPSTVPSLQMACLTLSPSVSTHRSPTPSWPASFNLNNWLLPIPWHDDV 124
            L+ P+TV    +A  T++ S  T RSP  +WP   ++     PIP  DD+
Sbjct: 893  LNDPTTV---SLAVDTVARSNVTPRSPGRAWPGDSDIRQ--RPIPRSDDI 937


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 227 VKQAICRLGTVDGPWSY 277
           V++ I + GT++ PWSY
Sbjct: 272 VRRGILQSGTLNAPWSY 288


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 227 VKQAICRLGTVDGPWSY 277
           V++ I + GT++ PWSY
Sbjct: 272 VRRGILQSGTLNAPWSY 288


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 206 VETDGDNVKQAICRLGTVDGPWSYNEERHQLVHRLHGHCL 325
           +ETD D  K +I R  ++D   + +E+     H+   H L
Sbjct: 201 IETDSDRRKGSIARCWSLDSTAASDEDISLTTHQQKRHKL 240


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 236 AICRLGTV-DGPWSYNEERHQLVHRLHGHCLTLQPHSGQ 349
           A+   G+V DGP S      Q+ H++H     +QP  GQ
Sbjct: 147 AVDHQGSVLDGPDSPPLVESQMHHQMHTQHPHMQPQQGQ 185


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 135  ATGWATASCSG*MRPASSASASGAWRPTEIMLNRPFADSAR 257
            A G+ATA+ S  +   +S + SG   PT  ++ +  A + R
Sbjct: 908  AQGFATAASSPGLLERASPAFSGTSSPTNSLVGKTVAVNFR 948


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/28 (21%), Positives = 17/28 (60%)
 Frame = -3

Query: 444 VLNTSRSHQLGVFCLTVHCWYVLFGSQG 361
           ++ + R+    ++  T+HCW  ++ ++G
Sbjct: 241 MMQSGRAKSEILYKSTLHCWATIYKTEG 268


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/28 (21%), Positives = 17/28 (60%)
 Frame = -3

Query: 444 VLNTSRSHQLGVFCLTVHCWYVLFGSQG 361
           ++ + R+    ++  T+HCW  ++ ++G
Sbjct: 241 MMQSGRAKSEILYKSTLHCWATIYKTEG 268


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 218 GDNVKQAICRLGTVD 262
           GDN K A+ RLG ++
Sbjct: 222 GDNTKAAVMRLGLME 236


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 196 ADAELAGLIQPEQLAVAHPVARRRTDI 116
           A A  AGL+QP+    ++ +++ R ++
Sbjct: 78  AGAVKAGLVQPQGTTFSNSISQLRKEV 104


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 273 LHGPSTVPSLQMACLTLSPSVSTHRSPTPSWPASFNL 163
           LH    +P++ M  LTL+      RS      AS NL
Sbjct: 255 LHATYVIPAVTMMLLTLTVLWLDSRSTERMIAASVNL 291


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 218 GDNVKQAICRLGTVDG 265
           GDN +  I RLG  DG
Sbjct: 21  GDNDRSRIARLGRDDG 36


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 277 QRGAPSAGAPATRALPH 327
           Q   PS+GAP  +  PH
Sbjct: 12  QSQQPSSGAPGPQPSPH 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,578
Number of Sequences: 438
Number of extensions: 3118
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)