Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308E07f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09000.1 68416.m01053 proline-rich family protein                   33   0.12 
At3g04960.1 68416.m00538 expressed protein low similarity to SP|...    30   0.82 
At1g75310.1 68414.m08748 DNAJ heat shock N-terminal domain-conta...    30   0.82 
At2g22720.3 68415.m02692 expressed protein                             29   1.9  
At2g22720.2 68415.m02691 expressed protein                             29   1.9  
At2g22720.1 68415.m02693 expressed protein                             29   1.9  
At3g19850.1 68416.m02514 phototropic-responsive NPH3 family prot...    28   3.3  
At2g31920.1 68415.m03899 expressed protein                             28   3.3  
At3g20260.1 68416.m02566 expressed protein                             28   4.4  
At2g17470.1 68415.m02017 expressed protein contains Pfam profile...    28   4.4  
At5g43100.1 68418.m05261 aspartyl protease family protein low si...    27   5.8  
At4g15236.1 68417.m02335 ABC transporter family protein similar ...    27   7.7  
At3g62200.1 68416.m06988 expressed protein contains Pfam profile...    27   7.7  
At3g59410.1 68416.m06626 protein kinase family protein low simil...    27   7.7  
At3g44200.1 68416.m04739 protein kinase family protein contains ...    27   7.7  
At2g04190.1 68415.m00404 meprin and TRAF homology domain-contain...    27   7.7  
At1g79960.1 68414.m09346 ovate protein-related contains TIGRFAM ...    27   7.7  
At1g09460.1 68414.m01058 glucan endo-1,3-beta-glucosidase-relate...    27   7.7  

>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = +3

Query: 147 ATASCSG*MRPASSASASGAWRPTEIMLNRPFADSARLTDRGATTRSAISWCTGYTGTAS 326
           +++S +G  RP+SS S+    RP      R        T R  TTR++ S  +  T   S
Sbjct: 137 SSSSVAGLRRPSSSGSSRSTSRPA--TPTRRSTTPTTSTSRPVTTRASNSRSSTPT---S 191

Query: 327 RCNLTPG-SSAWRPATQTTHTSSGPSNRKRPT 419
           R  LT   ++    A +TT TSSG +    PT
Sbjct: 192 RATLTAARATTSTAAPRTTTTSSGSARSATPT 223


>At3g04960.1 68416.m00538 expressed protein low similarity to
           SP|P32380 NUF1 protein (Spindle poly body spacer protein
           SPC110) {Saccharomyces cerevisiae}
          Length = 556

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 290 HQLVHRLHGHCLTLQPHSGQLGLAPCDPNNTYQQWTVKQKTP 415
           H++ H + G  +T+ P  G+      D   T++  + +QKTP
Sbjct: 411 HEMYHTIRGQYVTINPRKGETWALFGDWTKTWKSHSEQQKTP 452


>At1g75310.1 68414.m08748 DNAJ heat shock N-terminal domain-containing
            protein low similarity to SP|Q27974 Auxilin {Bos taurus};
            contains Pfam profile PF00226: DnaJ domain
          Length = 1448

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
 Frame = +3

Query: 180  ASSASASGAWRPTEIMLNRPFAD-SARLTDRGATTRSAISWCTGYTGTASRCNLTPGSSA 356
            A  AS     R     + R   +   R  ++  + +SA S    Y G+ S  +   G   
Sbjct: 1227 AEKASMQAKLRAERAAVERAITEVRERAMEKALSGKSAASQAKSYGGSKSFSS--SGERR 1284

Query: 357  WRPATQTTHTSSGPSNRKRPTGE 425
               ++ T + SSGPSN    TGE
Sbjct: 1285 GSSSSGTENKSSGPSNSSNQTGE 1307


>At2g22720.3 68415.m02692 expressed protein
          Length = 569

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 26/81 (32%), Positives = 35/81 (43%)
 Frame = +3

Query: 162 SG*MRPASSASASGAWRPTEIMLNRPFADSARLTDRGATTRSAISWCTGYTGTASRCNLT 341
           SG  RPASS S     RP     +RP +  +++  R A++ S     +G    AS  +  
Sbjct: 272 SGSGRPASSGSQMQNSRPQN---SRPASAGSQMQQRPASSGSQRPASSGSQRPASSGSQR 328

Query: 342 PGSSAWRPATQTTHTSSGPSN 404
           PGSS  R A      S    N
Sbjct: 329 PGSSTNRQAPMRPPGSGSTMN 349


>At2g22720.2 68415.m02691 expressed protein
          Length = 672

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 26/81 (32%), Positives = 35/81 (43%)
 Frame = +3

Query: 162 SG*MRPASSASASGAWRPTEIMLNRPFADSARLTDRGATTRSAISWCTGYTGTASRCNLT 341
           SG  RPASS S     RP     +RP +  +++  R A++ S     +G    AS  +  
Sbjct: 375 SGSGRPASSGSQMQNSRPQN---SRPASAGSQMQQRPASSGSQRPASSGSQRPASSGSQR 431

Query: 342 PGSSAWRPATQTTHTSSGPSN 404
           PGSS  R A      S    N
Sbjct: 432 PGSSTNRQAPMRPPGSGSTMN 452


>At2g22720.1 68415.m02693 expressed protein
          Length = 340

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 26/81 (32%), Positives = 35/81 (43%)
 Frame = +3

Query: 162 SG*MRPASSASASGAWRPTEIMLNRPFADSARLTDRGATTRSAISWCTGYTGTASRCNLT 341
           SG  RPASS S     RP     +RP +  +++  R A++ S     +G    AS  +  
Sbjct: 43  SGSGRPASSGSQMQNSRPQN---SRPASAGSQMQQRPASSGSQRPASSGSQRPASSGSQR 99

Query: 342 PGSSAWRPATQTTHTSSGPSN 404
           PGSS  R A      S    N
Sbjct: 100 PGSSTNRQAPMRPPGSGSTMN 120


>At3g19850.1 68416.m02514 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 554

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 177 PASSASASGAWRPTEIMLNRPFADSARLTDRGATTRSAISW 299
           P+SSASAS + +  E  + R ++D  R T R  + R++  W
Sbjct: 169 PSSSASASASSQSPETAMIRSYSDK-RSTSRSFSCRTSNEW 208


>At2g31920.1 68415.m03899 expressed protein
          Length = 585

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +2

Query: 8   DVYDKFPKLPKNVHWGMVKNKATGACLDTMGKAAPAYIGTSSCHGMGNSQLFRLNEAGQL 187
           D+Y       K VH  + +N+  G+C   + K A +++  +   G     LF+  E G+ 
Sbjct: 370 DIYHNTQNTCKAVHRLLTQNRNNGSCRLVVNKNATSWVQAAVVTGFSQFNLFK--EPGKK 427

Query: 188 G 190
           G
Sbjct: 428 G 428


>At3g20260.1 68416.m02566 expressed protein
          Length = 437

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 402 NRKRPTGEIDSY*EHENRHLNST 470
           ++K+P G I  +  H N H+NST
Sbjct: 322 DKKKPNGGIHLFGNHNNNHVNST 344


>At2g17470.1 68415.m02017 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 538

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 21/73 (28%), Positives = 28/73 (38%)
 Frame = +3

Query: 18  ISSRSSLRTFTGGW*RTKRLVPAWIQWGKPLRPISVRRRATGWATASCSG*MRPASSASA 197
           I S+S L   +  W  TK    A     +      ++  +  W T S S    PAS    
Sbjct: 373 IDSKSYLLVNSESWAATKEKAEAEEYEEEAHETKVIKSLSQIWDTNSSSNNQNPASGNDE 432

Query: 198 SGAWRPTEIMLNR 236
           S  W  TE M+ R
Sbjct: 433 SQIWESTESMMLR 445


>At5g43100.1 68418.m05261 aspartyl protease family protein low
           similarity to CND41, chloroplast nucleoid DNA binding
           protein [Nicotiana tabacum] GI:2541876; contains Pfam
           profile PF00026: Eukaryotic aspartyl protease
          Length = 631

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 309 SRCTS*WRSSL*LHGPS-TVPSLQMACLTLSPSVSTHRSPTPSWPASFNL 163
           + C+  WR       P+ T P  Q     +SPS +T  SPT   P  F +
Sbjct: 415 TNCSDIWRRLAAPESPAPTSPISQNKSSNISPSPATSESPTSHLPGVFRV 464


>At4g15236.1 68417.m02335 ABC transporter family protein similar to
           pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, ABC1 protein [Nicotiana
           plumbaginifolia] GI:14331118; contains Pfam profile
           PF00005: ABC transporter
          Length = 1388

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 15  TISSRSS-LRTFTGGW*RTKRLVPAWIQWGKPLRPIS 122
           TI S S  L +  GG+   K  +P+W++WG  L P+S
Sbjct: 652 TIGSISIVLLSVFGGFIVRKPSMPSWLEWGFWLSPLS 688


>At3g62200.1 68416.m06988 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 673

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 228 TLSPSVSTHRSPTPSWPASFNLNNW 154
           T  PSVST R P P+ P+S N+N +
Sbjct: 260 TSEPSVSTSRPPPPNLPSS-NVNTF 283


>At3g59410.1 68416.m06626 protein kinase family protein low
           similarity to GCN2 eIF2alpha kinase [Mus musculus]
           GI:6066585; contains Pfam profiles PF03129: Anticodon
           binding domain, PF00069: Protein kinase domain
          Length = 1241

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = -2

Query: 442 SQYESISPVGRFLFDGPLLVCVVWVAGRQAELPGVRLQREAVPV 311
           + +E + P+G+  F G +++C   + GRQ  +  +RL+ + +PV
Sbjct: 423 NDFEELKPLGQGGF-GHVVLCKNKLDGRQYAVKKIRLKDKEIPV 465


>At3g44200.1 68416.m04739 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 941

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 286 APSAGAPATRALPHAATSLRAAR-PGALRPKQHIPAVD 396
           A S+   A+  +P +  +  +AR PG+  PK H+P +D
Sbjct: 420 AHSSKTNASTPIPPSKLASDSARTPGSFPPKHHMPVID 457


>At2g04190.1 68415.m00404 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 411

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +2

Query: 50  WGMVKNKATGACLDTMGKAAPAYIGTSSCHGMGNSQLFRLNEAGQLGVGER 202
           WG    K  G+C+   G   PA+ G     G G     R++  G  G+G R
Sbjct: 10  WGDFPGKGVGSCVFGGGGGGPAFGGRGGGPGRGYGGGPRVHGPG-YGIGSR 59


>At1g79960.1 68414.m09346 ovate protein-related contains TIGRFAM
           TIGR01568 : uncharacterized plant-specific domain
           TIGR01568
          Length = 294

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 327 RCNLTPGSSAWRPATQTTHTSSGPSNR 407
           R +  PGSS  RP+ +TT TSS   +R
Sbjct: 157 RLSPPPGSSEGRPSMETTSTSSERQSR 183


>At1g09460.1 68414.m01058 glucan endo-1,3-beta-glucosidase-related
           similar to glucan endo-1,3-beta-glucosidase precursor
           SP:P52409 from [Triticum aestivum]
          Length = 330

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 240 FADSARLTDRGATTRSAISWCTGYTGTASRCNLTPGSSAWRPATQTTHTSSGPSNRKRPT 419
           F  +A L +   +T S    C   TG+++   +T G++   P+TQT +     S    PT
Sbjct: 200 FGGAASLVNTNPSTGS----CIYQTGSSTSTPMTAGTTTPTPSTQTVNQPPVTSTPIIPT 255

Query: 420 G 422
           G
Sbjct: 256 G 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,913,158
Number of Sequences: 28952
Number of extensions: 260140
Number of successful extensions: 864
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)