SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308E04f
         (517 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      47   8e-06
SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.56 
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.0  
SB_11393| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_55587| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.13)           27   6.9  
SB_19246| Best HMM Match : CPL (HMM E-Value=5.99994e-41)               27   9.2  

>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1080

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 39/133 (29%), Positives = 52/133 (39%), Gaps = 5/133 (3%)
 Frame = +3

Query: 132 RGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKEQXXXXXXXXXXXXXXXXXXXXXXX 311
           RGK  NHKGR R FT  E+L+ + + +++K++WR+ +                       
Sbjct: 66  RGK-PNHKGRRRHFTDEEDLKMELEKEKRKEEWRERRGEISSDDEEEKAESNPAQLKEGD 124

Query: 312 XXXX----HPTKAKGVSGLIEVENPNRVVXXXXXXXXXXXXGDVEKP-QLSXXXXXXXXX 476
                      K  GV  LIE+ENPNRV+             D   P QLS         
Sbjct: 125 SDSASDDDEEAKPTGVQALIEIENPNRVL---QKTKKVTEIDDAPAPAQLSRREKEEIAK 181

Query: 477 XXXXXXYQKLXAE 515
                 YQKL AE
Sbjct: 182 QQAKLRYQKLQAE 194


>SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 21/51 (41%), Positives = 27/51 (52%)
 Frame = +3

Query: 87  LVCSNQITK*NRKMPRGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKE 239
           L+CS++    NRK    K    K    K    EELEEQR  +EQ+ K +KE
Sbjct: 411 LLCSSE----NRKTVEEKERKKKEEQEKIKREEELEEQRL-EEQRIKMQKE 456


>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +3

Query: 186 ELEEQRKHDEQKKKWRKE 239
           ELEE+RK +E+K+K RK+
Sbjct: 145 ELEEKRKEEEEKEKQRKQ 162


>SB_11393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = +3

Query: 153 KGRNRKFTS-----PEELEEQRKHDEQKKKWRKEQ 242
           KG  RK +S     PE++E  RK DE+K +  KE+
Sbjct: 4   KGLGRKVSSQCYYTPEDIERARKEDEEKAEKAKEE 38


>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1266

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 108  TK*NRKMPRGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKEQ 242
            T+  RK P  K     GR RK    + LEE ++   +K++  KE+
Sbjct: 880  TRQGRKTPAPKQEKSAGRVRKSELTQLLEEVKEKQRRKQRGEKEE 924


>SB_55587| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.13)
          Length = 359

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 123 KMPRGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRK 236
           +M R +  N + R RK     ++EE+R+ DEQ ++ R+
Sbjct: 247 EMERLQKENEEERLRKEKEERKMEEERRRDEQARRDRE 284


>SB_19246| Best HMM Match : CPL (HMM E-Value=5.99994e-41)
          Length = 506

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 138 KFTNHKGRNRKFTSPEELEEQRKHD--EQKKKWRKE 239
           KF+  K  + K T P E + + K D  + KKK RKE
Sbjct: 74  KFSTPKASSNKDTKPSEGDTEDKQDIWKMKKKERKE 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,612,990
Number of Sequences: 59808
Number of extensions: 122612
Number of successful extensions: 472
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -