BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308E04f (517 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0) 47 8e-06 SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56 SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0 SB_11393| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0 SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3 SB_55587| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.13) 27 6.9 SB_19246| Best HMM Match : CPL (HMM E-Value=5.99994e-41) 27 9.2 >SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0) Length = 1080 Score = 47.2 bits (107), Expect = 8e-06 Identities = 39/133 (29%), Positives = 52/133 (39%), Gaps = 5/133 (3%) Frame = +3 Query: 132 RGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKEQXXXXXXXXXXXXXXXXXXXXXXX 311 RGK NHKGR R FT E+L+ + + +++K++WR+ + Sbjct: 66 RGK-PNHKGRRRHFTDEEDLKMELEKEKRKEEWRERRGEISSDDEEEKAESNPAQLKEGD 124 Query: 312 XXXX----HPTKAKGVSGLIEVENPNRVVXXXXXXXXXXXXGDVEKP-QLSXXXXXXXXX 476 K GV LIE+ENPNRV+ D P QLS Sbjct: 125 SDSASDDDEEAKPTGVQALIEIENPNRVL---QKTKKVTEIDDAPAPAQLSRREKEEIAK 181 Query: 477 XXXXXXYQKLXAE 515 YQKL AE Sbjct: 182 QQAKLRYQKLQAE 194 >SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 870 Score = 31.1 bits (67), Expect = 0.56 Identities = 21/51 (41%), Positives = 27/51 (52%) Frame = +3 Query: 87 LVCSNQITK*NRKMPRGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKE 239 L+CS++ NRK K K K EELEEQR +EQ+ K +KE Sbjct: 411 LLCSSE----NRKTVEEKERKKKEEQEKIKREEELEEQRL-EEQRIKMQKE 456 >SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1646 Score = 28.3 bits (60), Expect = 4.0 Identities = 11/18 (61%), Positives = 16/18 (88%) Frame = +3 Query: 186 ELEEQRKHDEQKKKWRKE 239 ELEE+RK +E+K+K RK+ Sbjct: 145 ELEEKRKEEEEKEKQRKQ 162 >SB_11393| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 126 Score = 28.3 bits (60), Expect = 4.0 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%) Frame = +3 Query: 153 KGRNRKFTS-----PEELEEQRKHDEQKKKWRKEQ 242 KG RK +S PE++E RK DE+K + KE+ Sbjct: 4 KGLGRKVSSQCYYTPEDIERARKEDEEKAEKAKEE 38 >SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1266 Score = 27.9 bits (59), Expect = 5.3 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +3 Query: 108 TK*NRKMPRGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKEQ 242 T+ RK P K GR RK + LEE ++ +K++ KE+ Sbjct: 880 TRQGRKTPAPKQEKSAGRVRKSELTQLLEEVKEKQRRKQRGEKEE 924 >SB_55587| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.13) Length = 359 Score = 27.5 bits (58), Expect = 6.9 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +3 Query: 123 KMPRGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRK 236 +M R + N + R RK ++EE+R+ DEQ ++ R+ Sbjct: 247 EMERLQKENEEERLRKEKEERKMEEERRRDEQARRDRE 284 >SB_19246| Best HMM Match : CPL (HMM E-Value=5.99994e-41) Length = 506 Score = 27.1 bits (57), Expect = 9.2 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = +3 Query: 138 KFTNHKGRNRKFTSPEELEEQRKHD--EQKKKWRKE 239 KF+ K + K T P E + + K D + KKK RKE Sbjct: 74 KFSTPKASSNKDTKPSEGDTEDKQDIWKMKKKERKE 109 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,612,990 Number of Sequences: 59808 Number of extensions: 122612 Number of successful extensions: 472 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 392 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 470 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1148326654 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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