BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308E04f (517 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g26600.1 68417.m03834 nucleolar protein, putative similar to ... 33 0.15 At1g77180.1 68414.m08991 chromatin protein family contains Pfam ... 32 0.26 At3g22104.1 68416.m02789 phototropic-responsive NPH3 protein-rel... 28 3.2 At5g46020.1 68418.m05659 expressed protein 28 4.3 At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi... 27 7.5 At3g53640.1 68416.m05925 protein kinase family protein contains ... 27 7.5 At2g22140.1 68415.m02630 expressed protein ; expression supporte... 27 9.9 >At4g26600.1 68417.m03834 nucleolar protein, putative similar to SP|P46087 Proliferating-cell nucleolar antigen p120 (Proliferation-associated nucleolar protein p120) {Homo sapiens}; contains Pfam profile PF01189: NOL1/NOP2/sun family Length = 671 Score = 32.7 bits (71), Expect = 0.15 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Frame = +3 Query: 120 RKMPRGKFTNHKGRNRKFTSPE--ELEEQRKHDEQKKKWRKE 239 RK PR K HKG+ K T E +EE RK +++ +W+ E Sbjct: 607 RKNPRSKEI-HKGKRNKNTKTESGNVEEPRKQKKKRSQWKNE 647 >At1g77180.1 68414.m08991 chromatin protein family contains Pfam domain, PF02731: SKIP/SNW domain found in chromatin proteins. Length = 613 Score = 31.9 bits (69), Expect = 0.26 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 3/41 (7%) Frame = +3 Query: 129 PRGKFTNH---KGRNRKFTSPEELEEQRKHDEQKKKWRKEQ 242 PRG + N+ +GR R+ P+E E+R+ Q++K R+E+ Sbjct: 367 PRGDYDNYDQDRGREREREEPQETREEREKRIQREKIREER 407 >At3g22104.1 68416.m02789 phototropic-responsive NPH3 protein-related contains BTB/POZ domain, INTERPRO:IPR000210 Length = 506 Score = 28.3 bits (60), Expect = 3.2 Identities = 11/34 (32%), Positives = 23/34 (67%) Frame = +3 Query: 135 GKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRK 236 G+ H RN+KF + E L+EQ++ +Q+++ ++ Sbjct: 408 GESRAHISRNQKFQAIETLDEQQQQQQQQQQQKQ 441 >At5g46020.1 68418.m05659 expressed protein Length = 164 Score = 27.9 bits (59), Expect = 4.3 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = +3 Query: 333 KAKGVSGLIEVENPNRV 383 K KG +IEV+NPNRV Sbjct: 64 KKKGAEAVIEVDNPNRV 80 >At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain; PMID: 12679534; putative bHLH131 transcription factor Length = 1513 Score = 27.1 bits (57), Expect = 7.5 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = +3 Query: 186 ELEEQRKHDEQKKKWRKEQ 242 ++EE++ E+K KW+KEQ Sbjct: 174 KMEEEKSQVEEKLKWKKEQ 192 >At3g53640.1 68416.m05925 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 642 Score = 27.1 bits (57), Expect = 7.5 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = +3 Query: 117 NRKMPRGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRKE 239 NR RG+ + K R+ + E E +R+ D+ + + R+E Sbjct: 85 NRDNYRGRSSRDKARSSSRETGRENERERRKDQDRDRGRRE 125 >At2g22140.1 68415.m02630 expressed protein ; expression supported by MPSS Length = 506 Score = 26.6 bits (56), Expect = 9.9 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = +3 Query: 126 MPRGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRK 236 M K + R K S E E+++ +++KKKW K Sbjct: 195 MEEKKLRKEQERLEKAASKAEEAERKRLEKEKKKWEK 231 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,870,425 Number of Sequences: 28952 Number of extensions: 87362 Number of successful extensions: 305 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 290 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 303 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 937669760 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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