Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308D12f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 4e-42
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06) 29 2.3
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0) 27 7.1
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1) 27 9.4
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17) 27 9.4
SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 167 bits (407), Expect = 4e-42
Identities = 88/174 (50%), Positives = 111/174 (63%), Gaps = 5/174 (2%)
Frame = +3
Query: 3 KHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLA 182
KH +K R E SQ++ TNAKFNQIV++RL MSR RPP+S++RL
Sbjct: 115 KHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPLSLARLV 174
Query: 183 RHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLA 362
R MK + I VVVG++T+D R++++P + + AL +E ARARIL AGGEILTFDQLA
Sbjct: 175 RKMKASGHKDKICVVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEILTFDQLA 234
Query: 363 LRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTK-----PYVRTKGHEKAR 509
LRAP G+ TVL+QG R AREA RH G APG P S T Y+ T G + R
Sbjct: 235 LRAPLGQNTVLLQGPRKAREAERHMGLAPGVPHSDTNWCGDLDYIGTDGDAQCR 288
>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 31.1 bits (67), Expect = 0.58
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -1
Query: 374 RSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRY 264
R+ +S L+ S+N ++QNA T+FF + K H + Y
Sbjct: 16 RANESTLLTSENNDIANQNADTAFFTSKKKRHNNNSY 52
>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
Length = 998
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 298 VT*RAATVIFGILYSLTSFVTVPTTTAIKPSR 203
+T R T++FGIL L + TT IKP R
Sbjct: 616 ITLRPITILFGILALLLNLFVFVTTVGIKPLR 647
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = +3
Query: 171 SRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTF 350
SRL MK PT++G+ V V+ + +T A E+ RAR+L G +
Sbjct: 92 SRLYEEMKHPTQDGMFVAVNSEVSVTFVGKEKEDVTFAKCAWFER-RARMLKGFGFVTFR 150
Query: 351 DQLALRAPTGKKTVLVQGQ 407
D + + KK ++ G+
Sbjct: 151 DPATIESVLAKKPHILDGK 169
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 333 GEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRS 464
GE+++ D++ +A + Q N EA R F P PG P S
Sbjct: 614 GEMMSDDEMKPKARCKRSQSTPIHQENREEAHRPFTPQPGRPLS 657
>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 277 RWLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYW 396
RWL ++ + L H WL ++L +SWL+ +R W
Sbjct: 19 RWLNYV--RWLYHVRWLYHVRWLYHVSWLYHVRWLYHVRW 56
>SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 367 VLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPR 492
V+R R+ W K +++V CV LA++ L + +F R
Sbjct: 34 VIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRR 75
>SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 367 VLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPR 492
V+R R+ W K +++V CV LA++ L + +F R
Sbjct: 34 VIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRR 75
>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1207
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 321 LAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 440
LA G T PT +T+ + GQ R A+R FG
Sbjct: 856 LATSGNTSTTISDNTATPTSSRTMQIPGQTQGRVALREFG 895
>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 785
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 230 HYHGNQTLTSWLLHVARQTRHRDWW 156
HYH N+ L +L ++R WW
Sbjct: 342 HYHSNEVLKDYLEMLSRTGPRHGWW 366
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 452 SWSRAKVTHCLTSISLTLYQY 390
+W RAKV HC +S S+T+ QY
Sbjct: 2539 TWYRAKVLHCDSSFSITV-QY 2558
>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
Length = 236
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 17 SSAHRS*ISRYLLEVTCKALQILGQT 94
++ HR ++RY+ TC L + G T
Sbjct: 84 ATCHRQHVTRYMSHATCHTLHVTGNT 109
>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1001
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 221 GNQTLTSWLLHVARQTRHRDWWP 153
G T + W LH ++Q RH+ WP
Sbjct: 177 GIDTGSLWQLHYSQQWRHKGRWP 199
>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
Length = 1248
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 417 REAVRHFGPAPGAPRSHTKPYVRTKGHEKARP 512
++AV+ PAP APR P V+ G ++ P
Sbjct: 978 KDAVKPSRPAPPAPRRPPPPAVKQDGEKEVLP 1009
>SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 670
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 423 PHEHFADLVPVLSSCQSEHEEPADQK*EFLLQQPKCVHELFR*HEEQP 280
PHE +LVP L + E EE D + E L++P V + H +P
Sbjct: 619 PHEPHFELVPPLKKPRCESEE--DDEEEHDLKRPSVVDDTELVHPTEP 664
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,762,342
Number of Sequences: 59808
Number of extensions: 387101
Number of successful extensions: 1113
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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