BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308D11f (491 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 193 1e-50 SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 193 1e-50 SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 28 0.88 SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 4.7 SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 25 4.7 SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 6.2 SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom... 25 8.2 >SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a|Schizosaccharomyces pombe|chr 1|||Manual Length = 130 Score = 193 bits (471), Expect = 1e-50 Identities = 92/130 (70%), Positives = 106/130 (81%), Gaps = 1/130 (0%) Frame = +1 Query: 37 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 216 MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF +DDHR+GK Sbjct: 1 MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60 Query: 217 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKH 393 IV+ L GR+NKCGVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K Sbjct: 61 IVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKD 120 Query: 394 LGGKILGFXF 423 GGKILGF + Sbjct: 121 AGGKILGFFY 130 >SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S15a|Schizosaccharomyces pombe|chr 1|||Manual Length = 130 Score = 193 bits (471), Expect = 1e-50 Identities = 92/130 (70%), Positives = 106/130 (81%), Gaps = 1/130 (0%) Frame = +1 Query: 37 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 216 MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF +DDHR+GK Sbjct: 1 MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60 Query: 217 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKH 393 IV+ L GR+NKCGVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K Sbjct: 61 IVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKD 120 Query: 394 LGGKILGFXF 423 GGKILGF + Sbjct: 121 AGGKILGFFY 130 >SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1096 Score = 27.9 bits (59), Expect = 0.88 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Frame = -1 Query: 191 ISNSPM*PCFIITVKNLTMTLEQGLMRTCLFP--RFSALCIDFKASLNTF-IRTMAEILH 21 I ++P PC I V+ + + L+R L+P R S L +D + L T I + I+ Sbjct: 350 IDSTPSTPCLISVVRTGFRSNKGQLIRNLLYPNLRPSQLYLDSMSFLKTMAILSFVSIVF 409 Query: 20 ITI*LN 3 I I LN Sbjct: 410 IAIYLN 415 >SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1066 Score = 25.4 bits (53), Expect = 4.7 Identities = 18/65 (27%), Positives = 25/65 (38%) Frame = -1 Query: 398 PRCFLLASSWSMMPPLVVRTR*PNCREGSRLVHLSISLMGTSKRGEMTPHLFSLPVRFTT 219 P + S +S+ P + T R S+S + TPH F PV + Sbjct: 138 PNSPTVPSKFSLNPSVATSTNISPRRHAKSHSVASVSSPNSHNAVPFTPHAFVPPVNNAS 197 Query: 218 ILPAL 204 LPAL Sbjct: 198 PLPAL 202 >SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 440 Score = 25.4 bits (53), Expect = 4.7 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +2 Query: 317 PHDSLVT*SLQQVVASWTMKKPEENTLEEK 406 P+ S +T SL Q + W +++PE EK Sbjct: 154 PNQSFLTASLDQKIFHWVIEEPESMLDAEK 183 >SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces pombe|chr 2|||Manual Length = 1014 Score = 25.0 bits (52), Expect = 6.2 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 328 FGYLVLTTSGGIMDHEEARRKHLGGKIL 411 FGY+V+TT+ + A K LG ++L Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVL 825 >SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharomyces pombe|chr 2|||Manual Length = 252 Score = 24.6 bits (51), Expect = 8.2 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = -1 Query: 332 PNCREGSRLVHLSISLMGTSKRGEMTPHLFSLPVRFTTILP 210 P ++ SR+ SI + K + PH+ ++P +T I+P Sbjct: 30 PTPQKVSRVTAHSILVNPRQKGNPLLPHVRNVPWEYTDIVP 70 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,937,450 Number of Sequences: 5004 Number of extensions: 37695 Number of successful extensions: 88 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 85 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 86 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 192109570 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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