Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308D11f
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   193   1e-50
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   193   1e-50
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    28   0.88 
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   4.7  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   4.7  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   6.2  
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom...    25   8.2  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  193 bits (471), Expect = 1e-50
 Identities = 92/130 (70%), Positives = 106/130 (81%), Gaps = 1/130 (0%)
 Frame = +1

Query: 37  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 216
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 217 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKH 393
           IV+ L GR+NKCGVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K 
Sbjct: 61  IVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKD 120

Query: 394 LGGKILGFXF 423
            GGKILGF +
Sbjct: 121 AGGKILGFFY 130


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  193 bits (471), Expect = 1e-50
 Identities = 92/130 (70%), Positives = 106/130 (81%), Gaps = 1/130 (0%)
 Frame = +1

Query: 37  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 216
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 217 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKH 393
           IV+ L GR+NKCGVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K 
Sbjct: 61  IVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKD 120

Query: 394 LGGKILGFXF 423
            GGKILGF +
Sbjct: 121 AGGKILGFFY 130


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 27.9 bits (59), Expect = 0.88
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = -1

Query: 191 ISNSPM*PCFIITVKNLTMTLEQGLMRTCLFP--RFSALCIDFKASLNTF-IRTMAEILH 21
           I ++P  PC I  V+    + +  L+R  L+P  R S L +D  + L T  I +   I+ 
Sbjct: 350 IDSTPSTPCLISVVRTGFRSNKGQLIRNLLYPNLRPSQLYLDSMSFLKTMAILSFVSIVF 409

Query: 20  ITI*LN 3
           I I LN
Sbjct: 410 IAIYLN 415


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 18/65 (27%), Positives = 25/65 (38%)
 Frame = -1

Query: 398 PRCFLLASSWSMMPPLVVRTR*PNCREGSRLVHLSISLMGTSKRGEMTPHLFSLPVRFTT 219
           P    + S +S+ P +   T     R        S+S   +      TPH F  PV   +
Sbjct: 138 PNSPTVPSKFSLNPSVATSTNISPRRHAKSHSVASVSSPNSHNAVPFTPHAFVPPVNNAS 197

Query: 218 ILPAL 204
            LPAL
Sbjct: 198 PLPAL 202


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 317 PHDSLVT*SLQQVVASWTMKKPEENTLEEK 406
           P+ S +T SL Q +  W +++PE     EK
Sbjct: 154 PNQSFLTASLDQKIFHWVIEEPESMLDAEK 183


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 328 FGYLVLTTSGGIMDHEEARRKHLGGKIL 411
           FGY+V+TT+    +   A  K LG ++L
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVL 825


>SPBC4F6.15c |swi10|rad23|DNA repair
           endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 332 PNCREGSRLVHLSISLMGTSKRGEMTPHLFSLPVRFTTILP 210
           P  ++ SR+   SI +    K   + PH+ ++P  +T I+P
Sbjct: 30  PTPQKVSRVTAHSILVNPRQKGNPLLPHVRNVPWEYTDIVP 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,450
Number of Sequences: 5004
Number of extensions: 37695
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)