Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308D11f
(491 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025460-6|AAB70989.1| 130|Caenorhabditis elegans Ribosomal pro... 231 2e-61
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr... 29 1.4
U41547-3|AAA83193.2| 145|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical pr... 27 5.6
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 27 5.6
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 27 5.6
AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical ... 27 5.6
AL032632-14|CAO82067.1| 504|Caenorhabditis elegans Hypothetical... 27 9.8
AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical... 27 9.8
>AF025460-6|AAB70989.1| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 22 protein.
Length = 130
Score = 231 bits (565), Expect = 2e-61
Identities = 110/130 (84%), Positives = 121/130 (93%), Gaps = 1/130 (0%)
Frame = +1
Query: 37 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 216
MVRMNVL+DAL +I+NAEKRGKRQVLIRP SKVIV+FLTVMMKHGYIGEFEIVDDHRAGK
Sbjct: 1 MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60
Query: 217 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKH 393
IVVNLTGRLNK VISPR ++ +ND+E++TN LLPSRQFGYL+LTTS GIMDHEEARRKH
Sbjct: 61 IVVNLTGRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKH 120
Query: 394 LGGKILGFXF 423
LGGKILGF F
Sbjct: 121 LGGKILGFFF 130
>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical protein
F37A4.4 protein.
Length = 1163
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 49 NVLSDALKSIH--NAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 222
NVL D+++ I+ N K KR I C+K L V + GY EI+ H A +
Sbjct: 826 NVLIDSVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGYQNLVEILIKHGADRSF 885
Query: 223 VN 228
+N
Sbjct: 886 LN 887
>U41547-3|AAA83193.2| 145|Caenorhabditis elegans Hypothetical
protein F22A3.2 protein.
Length = 145
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = -3
Query: 252 TLV*SACEIYNNLASSVIINDFKLSDVTVLHHHC*KLNDDFGTGPDEDL 106
++V +A E ++ + + F+ +V V + ++DDFG+ PD+DL
Sbjct: 14 SVVLAASESHSGRQNYRVKGAFRCGNVPVKNVQVKLIDDDFGSDPDDDL 62
>Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical
protein F17B5.6 protein.
Length = 363
Score = 27.5 bits (58), Expect = 5.6
Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Frame = +3
Query: 321 TTVWL-PSPYNKWW 359
T +WL P PYN WW
Sbjct: 29 TVIWLIPRPYNYWW 42
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 28 ISAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGY 174
IS M + + +DA + H + + + + +RP K+I FL + + GY
Sbjct: 497 ISLMDKYGIGTDATHAEHIEKIKTREYIGVRPDGKLIPSFLGLALVDGY 545
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 28 ISAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGY 174
IS M + + +DA + H + + + + +RP K+I FL + + GY
Sbjct: 497 ISLMDKYGIGTDATHAEHIEKIKTREYIGVRPDGKLIPSFLGLALVDGY 545
>AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical
protein C36E6.1b protein.
Length = 641
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 190 IVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN 309
+VD KI + + NKCG I + + + WTN
Sbjct: 148 VVDQGDPSKITIEIPIPANKCGAIIGKGGEQMRKLRSWTN 187
>AL032632-14|CAO82067.1| 504|Caenorhabditis elegans Hypothetical
protein Y11D7A.12b protein.
Length = 504
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 396 KVFSSGFFMVHDATTCCK 343
KVFS+GFFM D + C+
Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157
>AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical
protein Y11D7A.12a protein.
Length = 507
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 396 KVFSSGFFMVHDATTCCK 343
KVFS+GFFM D + C+
Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,765,920
Number of Sequences: 27780
Number of extensions: 211240
Number of successful extensions: 423
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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