BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308D11f (491 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF025460-6|AAB70989.1| 130|Caenorhabditis elegans Ribosomal pro... 231 2e-61 U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr... 29 1.4 U41547-3|AAA83193.2| 145|Caenorhabditis elegans Hypothetical pr... 28 4.2 Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical pr... 27 5.6 AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 27 5.6 AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 27 5.6 AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical ... 27 5.6 AL032632-14|CAO82067.1| 504|Caenorhabditis elegans Hypothetical... 27 9.8 AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical... 27 9.8 >AF025460-6|AAB70989.1| 130|Caenorhabditis elegans Ribosomal protein, small subunitprotein 22 protein. Length = 130 Score = 231 bits (565), Expect = 2e-61 Identities = 110/130 (84%), Positives = 121/130 (93%), Gaps = 1/130 (0%) Frame = +1 Query: 37 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 216 MVRMNVL+DAL +I+NAEKRGKRQVLIRP SKVIV+FLTVMMKHGYIGEFEIVDDHRAGK Sbjct: 1 MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60 Query: 217 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKH 393 IVVNLTGRLNK VISPR ++ +ND+E++TN LLPSRQFGYL+LTTS GIMDHEEARRKH Sbjct: 61 IVVNLTGRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKH 120 Query: 394 LGGKILGFXF 423 LGGKILGF F Sbjct: 121 LGGKILGFFF 130 >U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical protein F37A4.4 protein. Length = 1163 Score = 29.5 bits (63), Expect = 1.4 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Frame = +1 Query: 49 NVLSDALKSIH--NAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 222 NVL D+++ I+ N K KR I C+K L V + GY EI+ H A + Sbjct: 826 NVLIDSVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGYQNLVEILIKHGADRSF 885 Query: 223 VN 228 +N Sbjct: 886 LN 887 >U41547-3|AAA83193.2| 145|Caenorhabditis elegans Hypothetical protein F22A3.2 protein. Length = 145 Score = 27.9 bits (59), Expect = 4.2 Identities = 14/49 (28%), Positives = 28/49 (57%) Frame = -3 Query: 252 TLV*SACEIYNNLASSVIINDFKLSDVTVLHHHC*KLNDDFGTGPDEDL 106 ++V +A E ++ + + F+ +V V + ++DDFG+ PD+DL Sbjct: 14 SVVLAASESHSGRQNYRVKGAFRCGNVPVKNVQVKLIDDDFGSDPDDDL 62 >Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical protein F17B5.6 protein. Length = 363 Score = 27.5 bits (58), Expect = 5.6 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%) Frame = +3 Query: 321 TTVWL-PSPYNKWW 359 T +WL P PYN WW Sbjct: 29 TVIWLIPRPYNYWW 42 >AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical protein Y56A3A.27 protein. Length = 759 Score = 27.5 bits (58), Expect = 5.6 Identities = 14/49 (28%), Positives = 26/49 (53%) Frame = +1 Query: 28 ISAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGY 174 IS M + + +DA + H + + + + +RP K+I FL + + GY Sbjct: 497 ISLMDKYGIGTDATHAEHIEKIKTREYIGVRPDGKLIPSFLGLALVDGY 545 >AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisomerase III protein. Length = 759 Score = 27.5 bits (58), Expect = 5.6 Identities = 14/49 (28%), Positives = 26/49 (53%) Frame = +1 Query: 28 ISAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGY 174 IS M + + +DA + H + + + + +RP K+I FL + + GY Sbjct: 497 ISLMDKYGIGTDATHAEHIEKIKTREYIGVRPDGKLIPSFLGLALVDGY 545 >AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical protein C36E6.1b protein. Length = 641 Score = 27.5 bits (58), Expect = 5.6 Identities = 12/40 (30%), Positives = 18/40 (45%) Frame = +1 Query: 190 IVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN 309 +VD KI + + NKCG I + + + WTN Sbjct: 148 VVDQGDPSKITIEIPIPANKCGAIIGKGGEQMRKLRSWTN 187 >AL032632-14|CAO82067.1| 504|Caenorhabditis elegans Hypothetical protein Y11D7A.12b protein. Length = 504 Score = 26.6 bits (56), Expect = 9.8 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -3 Query: 396 KVFSSGFFMVHDATTCCK 343 KVFS+GFFM D + C+ Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157 >AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical protein Y11D7A.12a protein. Length = 507 Score = 26.6 bits (56), Expect = 9.8 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -3 Query: 396 KVFSSGFFMVHDATTCCK 343 KVFS+GFFM D + C+ Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,765,920 Number of Sequences: 27780 Number of extensions: 211240 Number of successful extensions: 423 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 412 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 422 length of database: 12,740,198 effective HSP length: 76 effective length of database: 10,628,918 effective search space used: 924715866 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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