BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308D10f (521 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 29 1.9 At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein ... 28 4.4 At1g17360.1 68414.m02116 COP1-interacting protein-related simila... 27 5.8 At3g09320.1 68416.m01106 zinc finger (DHHC type) family protein ... 27 7.7 >At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase domain-containing protein similar to transcriptional activator SRCAP [Homo sapiens] GI:5106572; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain Length = 2055 Score = 29.1 bits (62), Expect = 1.9 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +1 Query: 259 CETYA*LMRRHVRSVSSFLISE*NNQTDEGTCSFSRLRHSVRSV 390 CE Y L++RH+ S S ++E N T G ++R++ Sbjct: 1720 CERYRELIQRHILSASDSAVNEKNLNTGSGKALLKVTEENIRTL 1763 >At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein low similarity to Golgi-specific DHHC zinc figer protein [Mus musculus] GI:21728103; contains Pfam profile PF01529: DHHC zinc finger domain Length = 477 Score = 27.9 bits (59), Expect = 4.4 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = +3 Query: 78 LRRGGDFCDWTHKFFGPGNFKIFHMFIGFARCVC-FVF 188 ++R C W + G N++ F MFI + +C +VF Sbjct: 169 VQRFDHHCPWVGQCIGVRNYRFFFMFISTSTTLCIYVF 206 >At1g17360.1 68414.m02116 COP1-interacting protein-related similar to COP1-Interacting Protein 7 (CIP7) (GI:3327870) [Arabidopsis thaliana] Length = 1032 Score = 27.5 bits (58), Expect = 5.8 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Frame = -1 Query: 173 ATRKTNEHMKNFKISRT--KKFMRPITKVSSSPQCIYVKLLTGQDI 42 +TR+ E ++F SRT KK+ PI+ + S + KL++GQ I Sbjct: 609 STRQRAEKFRSFN-SRTSSKKYQHPISSLQSEEENEKDKLVSGQSI 653 >At3g09320.1 68416.m01106 zinc finger (DHHC type) family protein similar to Golgi-specific DHHC zinc figer protein [Mus musculus] GI:21728103; contains Pfam profile PF01529: DHHC zinc finger domain Length = 286 Score = 27.1 bits (57), Expect = 7.7 Identities = 9/27 (33%), Positives = 15/27 (55%) Frame = +3 Query: 99 CDWTHKFFGPGNFKIFHMFIGFARCVC 179 C W + G N+K+F +F+ +A C Sbjct: 127 CIWINNCVGHTNYKVFFVFVVYAVTAC 153 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,655,902 Number of Sequences: 28952 Number of extensions: 163123 Number of successful extensions: 324 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 321 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 324 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 957410176 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -